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WormBase Tree Display for Gene: WBGene00011683

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Name Class

WBGene00011683SMapS_parentSequenceT10B10
IdentityVersion2
NameCGC_namephat-6Person_evidenceWBPerson3905
WBPerson980
Sequence_nameT10B10.6
Molecular_nameT10B10.6
T10B10.6.1
CE06404
Other_nameCELE_T10B10.6Accession_evidenceNDBBX284606
Public_namephat-6
DB_infoDatabaseAceViewgeneXP812
WormQTLgeneWBGene00011683
WormFluxgeneWBGene00011683
NDBlocus_tagCELE_T10B10.6
NCBIgene181614
RefSeqproteinNM_078124.6
TrEMBLUniProtAccQ22373
UniProt_GCRPUniProtAccQ22373
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:52WBPerson1971EventImportedInitial conversion from CDS class of WS125
223 Feb 2007 15:37:00WBPerson2970Name_changeCGC_namephat-6
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classphat
AlleleWBVar01499519
WBVar01499710
WBVar00221685
WBVar00221687
WBVar00313859
WBVar00526070
WBVar00526071
WBVar01213397
WBVar00526072
WBVar00526073
WBVar01213398
WBVar00526074
WBVar01213399
WBVar00526075
WBVar01213400
WBVar00526076
WBVar01213401
WBVar00526077
WBVar01213402
WBVar01213403
WBVar01213404
WBVar01213405
WBVar01213406
WBVar01494306
WBVar00086188
WBVar00086189
WBVar00086190
WBVar00086191
WBVar01955343
WBVar01911350
WBVar01528325
WBVar01498960
WBVar01500067
RNASeq_FPKM (74)
GO_annotation00075120
Ortholog (20)
Structured_descriptionAutomated_descriptionInvolved in pharyngeal gland morphogenesis. Expressed in g1AL; g1AR; g1P; g2L; and g2R.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST10B10.6
Corresponding_transcriptT10B10.6.1
Other_sequenceOden_isotig03417
Oden_isotig03420
Oden_isotig03421
Associated_featureWBsf654641
WBsf654642
WBsf1008126
WBsf1008127
WBsf1024533
WBsf238306
Experimental_infoRNAi_resultWBRNAi00035407Inferred_automaticallyRNAi_primary
WBRNAi00052990Inferred_automaticallyRNAi_primary
WBRNAi00018521Inferred_automaticallyRNAi_primary
Expr_patternExpr10168
Expr1020728
Expr1156593
Expr2014887
Expr2033122
Drives_constructWBCnstr00030470
Construct_productWBCnstr00030470
Microarray_results (19)
Expression_clusterWBPaper00037055:DAF-16_binding_DNA
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:dopaminergic-neurons_larva_enriched
WBPaper00037950:dopaminergic-neurons_larva_SelectivelyEnriched
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00037950:PVD-OLL-neurons_larva_enriched
WBPaper00037950:PVD-OLL-neurons_larva_SelectivelyEnriched
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
WBPaper00040420:ALM_PLM_enriched
WBPaper00040420:FLP_enriched
WBPaper00042215:wdr-23(tm1817)_upregulated
WBPaper00042561:smg-2(RNAi)_upregulated
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00042561:smgl-2(RNAi)_upregulated
WBPaper00044037:eat-2_upregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044578:reduced-humidity_downregulated_microarray
WBPaper00044656:tatn-1(qd182)_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00045316:prg-1_upregulated_L4
WBPaper00045417:128Q-huntingtin_downreglated
WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
WBPaper00048988:neuron_expressed
WBPaper00050080:rbr-2(tm3141)_downregulated
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050743:elli-1(sam-3)_upregulated
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050903:mir-35-41(nDf50)_25C_upregulated
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:seam_expressed
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053094:adr-2(ok735)_neuron_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:stavudine_72h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00055226:ADR-2_target_adr-1(tm668)
WBPaper00055354:eat-2(ad1116)_upregulated
WBPaper00055482:pmt-2(RNAi)_upregulated
WBPaper00055648:nerve-ring_expressed
WBPaper00055827:daf-2(e1370)_downregulated
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated
WBPaper00055971:nhl-2(ok818)_20C_downregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056139:soil-microbiota_upregulated
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056550:ceh-60(ok1485)_upregulated_AdultDay1
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057041:unc-70(cas983)_downregulated
WBPaper00057143:ztf-11(RNAi)_upregulated
WBPaper00058948:npr-8(ok1439)_downregulated_OP50
WBPaper00058948:PA14_downregulated
WBPaper00059471:EGL-43_interacting
WBPaper00059604:fluvastatin_upregulated_N2
WBPaper00059605:simr-1(cmp36)_upregulated
WBPaper00059609:malt-1_ilc-17.1_nfki-1_downregulated
WBPaper00059824:rnp-6(dh1127)_regulated_OP50
WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
WBPaper00060014:set-2(zr2012)_downregulated
WBPaper00060459:bcat-1(RNAi)_upregulated
WBPaper00060661:sensory-neuron_depleted
WBPaper00060909:atfs-1(et18)_downregulated
WBPaper00061040:eat-2(ad1116)_upregulated
WBPaper00061340:AIA
WBPaper00061340:g1A
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061439:unc-30(ok613)_upregulated
WBPaper00061527:M04G7.1-R06F6.7
WBPaper00061753:csr-1(tor159)_downregulated_25C
WBPaper00061995:mter-4(syb3662syb3403)_downregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:etr-1(lq61)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064156:lbp-3(overexpress)_upregulated
WBPaper00064156:lipl-4(overexpress)_upregulated
WBPaper00064721:fasn-1(g14)_downregulated_starved
WBPaper00064788:ketamine_downregulated
WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
WBPaper00065149:lin-52(n771)_downregulated
WBPaper00065581:hpk-1(pk1393)_upregulated
WBPaper00065835:Day11_vs_Day1_downregulated
WBPaper00065841:41_0
WBPaper00065841:41_1
WBPaper00065841:41_2
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00065993:glp-1(e2141)_upregulated
cgc4489_group_13
WBPaper00025141:N2_Expressed_Genes
WBPaper00028564:CeMM_vs_NGM_upregulated
WBPaper00028789:PA14_vs_OP50_downregulated_8hr
WBPaper00031532:Larva_Pan_Neuronal_Depleted
WBPaper00035227:heat_shock_regulated
WBPaper00036286:Pattern_I
WBPaper00037147:heatshock_downregulated
WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
WBPaper00041002:HQ_3d_0.2mM_Up
WBPaper00041002:HQ_3d_2.0mM_Up
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00042274:tbx-2(bx59)_upregulated
WBPaper00045263:nuo-6(qm200)_upregulated
WBPaper00045673:colistin_downregulated
WBPaper00047070:N2_starvation_upregulated
WBPaper00047070:xpa-1_UV_upregulated
WBPaper00048989:eat-2(ad465)_upregulated_in-DMSO
WBPaper00048989:N2_allantoin_downregulated
InteractionWBInteraction000287524
WBInteraction000400036
Map_infoMapXPosition22.2715
PositivePositive_cloneT10B10Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00028564
WBPaper00032277
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene