WormBase Tree Display for Gene: WBGene00011557
expand all nodes | collapse all nodes | view schema
WBGene00011557 | SMap | S_parent | Sequence | T07A5 | ||||||
---|---|---|---|---|---|---|---|---|---|---|
Identity | Version | 4 | ||||||||
Name (4) | ||||||||||
DB_info | Database | AceView | gene | 3L388 | ||||||
WormQTL | gene | WBGene00011557 | ||||||||
WormFlux | gene | WBGene00011557 | ||||||||
NDB | locus_tag | CELE_T07A5.4 | ||||||||
NCBI | gene | 3565426 | ||||||||
Species | Caenorhabditis elegans | |||||||||
History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | |||
2 | 12 Jul 2007 15:09:04 | WBPerson2970 | Name_change | CGC_name | ostf-4 | |||||
3 | 09 Jul 2019 09:59:04 | WBPerson1983 | Name_change | CGC_name | ||||||
4 | 20 Jan 2020 12:16:23 | WBPerson4025 | Event | Changed_class | CDS | Pseudogene | ||||
Status | Live | |||||||||
Gene_info | Biotype | SO:0000336 | ||||||||
Allele | WBVar01500260 | |||||||||
WBVar02152541 | ||||||||||
WBVar01499774 | ||||||||||
WBVar01447977 | ||||||||||
WBVar01447978 | ||||||||||
WBVar02156406 | ||||||||||
WBVar00407071 | ||||||||||
WBVar00855630 | ||||||||||
WBVar00855631 | ||||||||||
RNASeq_FPKM (74) | ||||||||||
Ortholog | WBGene00164957 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
WBGene00158585 | Caenorhabditis brenneri | From_analysis | TreeFam | |||||||
WBGene00136173 | Caenorhabditis japonica | From_analysis | TreeFam | |||||||
WBGene00119522 | Caenorhabditis japonica | From_analysis | TreeFam | |||||||
WBGene00079127 | Caenorhabditis remanei | From_analysis | TreeFam | |||||||
WBGene00074688 | Caenorhabditis remanei | From_analysis | TreeFam | |||||||
WBGene00080435 | Caenorhabditis remanei | From_analysis | TreeFam | |||||||
WBGene00068392 | Caenorhabditis remanei | From_analysis | TreeFam | |||||||
Paralog | WBGene00018145 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00022847 | Caenorhabditis elegans | From_analysis | Panther | |||||||
WBGene00016877 | Caenorhabditis elegans | From_analysis | Panther | |||||||
WBGene00022848 | Caenorhabditis elegans | From_analysis | Panther | |||||||
Structured_description | Automated_description | Is affected by several genes including eat-2; alg-1; and csr-1 based on RNA-seq studies. Is affected by multi-walled carbon nanotube and bortezomib based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | |||||||||
WBPerson37462 | ||||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
Molecular_info | Corresponding_CDS_history | T07A5.4:wp275 | ||||||||
Corresponding_pseudogene | T07A5.4 | |||||||||
Other_sequence | FC812007.1 | |||||||||
Experimental_info | Expr_pattern | Expr1023549 | ||||||||
Expr1035092 | ||||||||||
Expr1156302 | ||||||||||
Drives_construct | WBCnstr00030563 | |||||||||
Construct_product | WBCnstr00030563 | |||||||||
Microarray_results | A_12_P105708 | |||||||||
GPL13394_WBGene00011557 | ||||||||||
GPL13914_T07A5.4 | ||||||||||
GPL14144_T07A5.4_555-614_0.966_1_A | ||||||||||
GPL19516_CGZ0033841 | ||||||||||
GPL21109_T07A5.4 | ||||||||||
GPL8304_CE_WBGene00011557_A | ||||||||||
GPL8673_T07A5_4P00072 | ||||||||||
GPL8673_T07A5_4P00359 | ||||||||||
GPL8673_T07A5_4P00460 | ||||||||||
Expression_cluster (29) | ||||||||||
Map_info | Map | III | Position | 2.26873 | Error | 0.008734 | ||||
Positive | Positive_clone | T07A5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
Pseudo_map_position | ||||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
ostf-4 was incorrectly assigned to this locus back in 2007 instead of T07A5.5 which is the C. elegans ortholog. | Curator_confirmed | WBPerson1983 | ||||||||
Method | Gene |