WormBase Tree Display for Gene: WBGene00016877
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| WBGene00016877 | SMap | S_parent | Sequence | C52D10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | Sequence_name | C52D10.3 | |||||||
| Molecular_name | C52D10.3a | ||||||||
| C52D10.3a.1 | |||||||||
| CE50642 | |||||||||
| C52D10.3b | |||||||||
| CE50635 | |||||||||
| C52D10.3b.1 | |||||||||
| Other_name | CELE_C52D10.3 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | C52D10.3 | ||||||||
| DB_info | Database | AceView | gene | 4S131 | |||||
| WormQTL | gene | WBGene00016877 | |||||||
| WormFlux | gene | WBGene00016877 | |||||||
| NDB | locus_tag | CELE_C52D10.3 | |||||||
| Panther | gene | CAEEL|EnsemblGenome=WBGene00016877|UniProtKB=A0A0K3AXD0 | |||||||
| family | PTHR31005 | ||||||||
| NCBI | gene | 3565402 | |||||||
| RefSeq | protein | NM_001313023.2 | |||||||
| NM_001313022.2 | |||||||||
| TrEMBL | UniProtAcc | A0A0K3AXD0 | |||||||
| A0A0K3AV18 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A0K3AXD0 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 09 Mar 2015 14:30:37 | WBPerson4025 | Event | Acquires_merge | WBGene00016875 | ||||
| Acquires_merge | WBGene00016875 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (210) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (29) | |||||||||
| Paralog | WBGene00011557 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00018145 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022847 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022848 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Enriched in NSM; intestine; and pharyngeal muscle cell based on tiling array; RNA-seq; proteomic; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by twenty-five chemicals including methylmercuric chloride; rotenone; and Tunicamycin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Domain of unknown function DUF4139; N-terminal domain of unknown function (DUF4140); Domain of unknown function (DUF4139); Domain of unknown function DUF4140; and Conserved hypothetical protein CHP02231. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C52D10.3a | |||||||
| C52D10.3b | |||||||||
| Corresponding_CDS_history | C52D10.3:wp114 | ||||||||
| C52D10.3:wp158 | |||||||||
| C52D10.3:wp247 | |||||||||
| Corresponding_transcript | C52D10.3a.1 | ||||||||
| C52D10.3b.1 | |||||||||
| Other_sequence (11) | |||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr1018708 | ||||||||
| Expr1025594 | |||||||||
| Expr1037240 | |||||||||
| Expr1037241 | |||||||||
| Expr1146984 | |||||||||
| Expr1146988 | |||||||||
| Expr2001862 | |||||||||
| Expr2020088 | |||||||||
| Drives_construct | WBCnstr00027733 | ||||||||
| Construct_product | WBCnstr00027733 | ||||||||
| Microarray_results (43) | |||||||||
| Expression_cluster (314) | |||||||||
| Interaction | WBInteraction000152898 | ||||||||
| WBInteraction000338202 | |||||||||
| WBInteraction000379116 | |||||||||
| WBInteraction000415683 | |||||||||
| WBInteraction000503115 | |||||||||
| WBInteraction000504125 | |||||||||
| WBInteraction000543569 | |||||||||
| Map_info | Positive | Positive_clone | C52D10 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | IV | 16.2407 | |||||||
| Method | Gene |
