WormBase Tree Display for Gene: WBGene00011557

WBGene00011557 SMap: S_parent: Sequence: T07A5
  Identity: Version: 4
    Name: Sequence_name: T07A5.4
      Molecular_name: T07A5.4
      Other_name: CELE_T07A5.4 Accession_evidence: NDB BX284603
      Public_name: T07A5.4
    DB_info: Database: AceView gene 3L388
        WormQTL gene WBGene00011557
        WormFlux gene WBGene00011557
        NDB locus_tag CELE_T07A5.4
        NCBI gene 3565426
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 12 Jul 2007 15:09:04 WBPerson2970 Name_change: CGC_name: ostf-4
        3 09 Jul 2019 09:59:04 WBPerson1983 Name_change: CGC_name
        4 20 Jan 2020 12:16:23 WBPerson4025 Event: Changed_class: CDS Pseudogene
    Status: Live
  Gene_info: Biotype: SO:0000336
    Allele: WBVar01500260
      WBVar02152541
      WBVar01499774
      WBVar01447977
      WBVar01447978
      WBVar02156406
      WBVar00407071
      WBVar00855630
      WBVar00855631
    RNASeq_FPKM (74)
    Ortholog: WBGene00164957 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00158585 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00136173 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00119522 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00079127 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00074688 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00080435 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00068392 Caenorhabditis remanei From_analysis: TreeFam
    Paralog: WBGene00018145 Caenorhabditis elegans From_analysis: Panther
      WBGene00022847 Caenorhabditis elegans From_analysis: Panther
      WBGene00016877 Caenorhabditis elegans From_analysis: Panther
      WBGene00022848 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Is affected by several genes including eat-2; alg-1; and csr-1 based on RNA-seq studies. Is affected by multi-walled carbon nanotube and bortezomib based on RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS_history: T07A5.4:wp275
    Corresponding_pseudogene: T07A5.4
    Other_sequence: FC812007.1
  Experimental_info: Expr_pattern: Expr1023549
      Expr1035092
      Expr1156302
    Drives_construct: WBCnstr00030563
    Construct_product: WBCnstr00030563
    Microarray_results: A_12_P105708
      GPL13394_WBGene00011557
      GPL13914_T07A5.4
      GPL14144_T07A5.4_555-614_0.966_1_A
      GPL19516_CGZ0033841
      GPL21109_T07A5.4
      GPL8304_CE_WBGene00011557_A
      GPL8673_T07A5_4P00072
      GPL8673_T07A5_4P00359
      GPL8673_T07A5_4P00460
    Expression_cluster: WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
      WBPaper00044656:tatn-1(qd182)_upregulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00049377:MWCNT_downregulated
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00054191:H3.3(null)_L1_downregulated
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00055013:hmg-3(bar24)_upregulated
      WBPaper00055013:hmg-4(RNAi)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00057068:ints-4(RNAi)_upregulated
      WBPaper00058955:heatshock_upregulated_CE
      WBPaper00059598:HeatShock_upregulated
      WBPaper00061040:eat-2(ad1116)_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00062345:bortezomib_4h_upregulated_N2
      WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
      WBPaper00065749:Heat-Shock_upregulated_N2
      WBPaper00065841:13_1
      WBPaper00065975:P-body_vs_oocyte_depleted
  Map_info: Map: III Position: 2.26873 Error: 0.008734
    Positive: Positive_clone: T07A5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
    ostf-4 was incorrectly assigned to this locus back in 2007 instead of T07A5.5 which is the C. elegans ortholog. Curator_confirmed: WBPerson1983
  Method: Gene