WormBase Tree Display for Gene: WBGene00011344

WBGene00011344 SMap: S_parent: Sequence: T01G9
  Identity: Version: 1
    Name: Sequence_name: T01G9.2
      Molecular_name: T01G9.2a
        T01G9.2a.1
        CE27202
        T01G9.2b
        CE23937
        T01G9.2b.1
      Other_name: ORF1 Accession_evidence: EMBL X51321
        CELE_T01G9.2 Accession_evidence: NDB BX284601
      Public_name: T01G9.2
    DB_info: Database: AceView gene 1I852
        WormQTL gene WBGene00011344
        WormFlux gene WBGene00011344
        NDB locus_tag CELE_T01G9.2
        Panther gene CAEEL|WormBase=WBGene00011344|UniProtKB=P34692
          family PTHR13465
        NCBI gene 172609
        RefSeq protein NM_059851.6
            NM_171841.9
        SwissProt UniProtAcc P34692
        TREEFAM TREEFAM_ID TF313669
        UniProt_GCRP UniProtAcc P34692
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (157)
    RNASeq_FPKM (74)
    GO_annotation (12)
    Ortholog (33)
    Structured_description: Automated_description: Predicted to be involved in Golgi to plasma membrane protein transport. Located in striated muscle dense body. Is an ortholog of human PHAF1 (phagosome assembly factor 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T01G9.2a
      T01G9.2b
    Corresponding_transcript: T01G9.2a.1
      T01G9.2b.1
    Other_sequence (17)
    Associated_feature (33)
  Experimental_info: RNAi_result: WBRNAi00109739 Inferred_automatically: RNAi_primary
      WBRNAi00109645 Inferred_automatically: RNAi_primary
      WBRNAi00052158 Inferred_automatically: RNAi_primary
      WBRNAi00004096 Inferred_automatically: RNAi_primary
      WBRNAi00109692 Inferred_automatically: RNAi_primary
      WBRNAi00116977 Inferred_automatically: RNAi_primary
      WBRNAi00109786 Inferred_automatically: RNAi_primary
      WBRNAi00035031 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr9392
      Expr1016569
      Expr1034993
      Expr1155792
      Expr2005723
      Expr2023937
    Drives_construct: WBCnstr00030726
    Construct_product: WBCnstr00013957
      WBCnstr00030726
    Microarray_results (27)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032031:DConiospora_downregulated_cDNA_12h
      WBPaper00032031:DConiospora_upregulated_cDNA_24h
      WBPaper00032425:down_in_zfp-1
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00033070:Elbe_upregulated
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00045774:clk-1_upregulated
      WBPaper00046509:htz-1(ok3099)_upregulated
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051257:Levamisole_upregulated
      WBPaper00051461:pig-1(gm344)_upregulated
      WBPaper00053295:lin-22(ot269)_downregulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055482:Tunicamycin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00056034:pals-22(jy3)_downregulated
      WBPaper00056139:soil-microbiota_upregulated
      WBPaper00056161:hermaphrodite_enriched_siRNA
      WBPaper00056165:MINA-1_interacting_mRNA
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00057288:Cold_downregulated_transcript
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059471:EGL-43_interacting
      WBPaper00059567:olrn-1(ums9)_regulated
      WBPaper00059763:neuron_expressed
      WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
      WBPaper00059987:Wounding_upregulated
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061340:g2_parent
      WBPaper00061340:ILsh_OLLsh_OLQsh
      WBPaper00061527:cdc-42_17192-rab-5_18073
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064716:paraquat_upregulated
      WBPaper00064871:hypoxia_downregulated_F1
      WBPaper00065158:AFD_depleted
      WBPaper00066062:xrep-4(lax137)_upregulated
      cgc4386_cluster_5_4
      WBPaper00025032:cluster_13
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00030839:Larval_A_Class
      WBPaper00030985:Erwinia_carotovora_upregulated
      WBPaper00034739:N2moreDR1350
      WBPaper00034757:up_by_oxidative_stress
      WBPaper00035905:FBF-1_Associated
      WBPaper00037695:LD_DD_6-day
      WBPaper00038231:Cry5B_1.5-fold_upregulated
      WBPaper00038231:Cry5B_2-fold_upregulated
      WBPaper00040184:hcf-1up_sir-2.1up_daf-2nc
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_old
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00048989:N2_rapamycin_downregulated
      WBPaper00057098:SiO2-nanoparticles_upregulated
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(23_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_ME
      [cgc6390]:Cluster_A
    Interaction (68)
  Map_info: Positive: Positive_clone: T01G9 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: I 2.70471
  Reference: WBPaper00038444
    WBPaper00038491
    WBPaper00038596
    WBPaper00044291
    WBPaper00054445
    WBPaper00055090
    WBPaper00060449
  Method: Gene