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WormBase Tree Display for Gene: WBGene00011284

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Name Class

WBGene00011284SMapS_parentSequenceR90
IdentityVersion2
NameCGC_namettr-27
Sequence_nameR90.2
Molecular_nameR90.2
R90.2.1
CE06326
Other_nameCELE_R90.2Accession_evidenceNDBBX284605
Public_namettr-27
DB_infoDatabaseAceViewgene5N384
WormQTLgeneWBGene00011284
WormFluxgeneWBGene00011284
NDBlocus_tagCELE_R90.2
PanthergeneCAEEL|WormBase=WBGene00011284|UniProtKB=Q22032
familyPTHR21700
NCBIgene179769
RefSeqproteinNM_073824.6
TREEFAMTREEFAM_IDTF315773
TrEMBLUniProtAccQ22032
UniProt_GCRPUniProtAccQ22032
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:52WBPerson1971EventImportedInitial conversion from CDS class of WS125
220 Sep 2007 11:48:01WBPerson2970Name_changeCGC_namettr-27
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classttr
AlleleWBVar00473806
WBVar01868616
WBVar01500212
WBVar01500213
WBVar01499299
WBVar01499316
RNASeq_FPKM (74)
GO_annotation00073827
00118545
Contained_in_operonCEOP5501
Ortholog (30)
Paralog (62)
Structured_descriptionAutomated_descriptionPredicted to be located in cell surface and extracellular region.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSR90.2
Corresponding_transcriptR90.2.1
Other_sequence (56)
Associated_featureWBsf1001664
WBsf234739
Experimental_infoRNAi_resultWBRNAi00034983Inferred_automaticallyRNAi_primary
WBRNAi00017923Inferred_automaticallyRNAi_primary
WBRNAi00052058Inferred_automaticallyRNAi_primary
Expr_patternExpr1015532
Expr1155691
Expr2017592
Expr2035731
Drives_constructWBCnstr00030778
Construct_productWBCnstr00030778
Microarray_results (18)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00036231:long-telomeres_downregulated
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00037950:PVD-OLL-neurons_larva_enriched
WBPaper00037950:PVD-OLL-neurons_larva_SelectivelyEnriched
WBPaper00038168:lin-15B(n744)_downregulated
WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00040560:hpl-2_embryo_upregulated
WBPaper00042215:wdr-23(tm1817)_upregulated
WBPaper00042561:smg-2(RNAi)_upregulated
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00042561:smgl-2(RNAi)_upregulated
WBPaper00044037:eat-2_upregulated
WBPaper00044578:reduced-humidity_downregulated_microarray
WBPaper00044656:tatn-1(qd182)_upregulated
WBPaper00044736:oscillating_dev_expression
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
WBPaper00045316:prg-1_upregulated_L4
WBPaper00045934:wrn-1(gk99)_upregulated
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
WBPaper00049495:starvation-refeeding_regulated
WBPaper00049498:npr-1(ur89)_regulated_2
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049954:BPA_downregulated
WBPaper00050080:rbr-2(tm3141)_downregulated
WBPaper00050332:skn-1(RNAi)_downregulated
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050801:DPY-21_dauer_regulome
WBPaper00050903:mir-35-41(nDf50)_20C_upregulated
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:pharynx_expressed
WBPaper00051257:Levamisole_upregulated
WBPaper00051558:aging_regulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053388:dauer_regulated_Cluster1
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
WBPaper00054493:hpl-2(tm1489)_downregulated
WBPaper00055049:S.gordonii_downregulated
WBPaper00055354:eat-2(ad1116)_upregulated
WBPaper00055354:Rapamycin-Allantoin_upregulated
WBPaper00055354:Rapamycin_upregulated
WBPaper00055626:pry-1(mu38)_upregulated
WBPaper00055648:anterior-head_expressed
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055971:nhl-2(ok818)_20C_downregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056167:Cry5B_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056617:adr-1_upregulated_embryo_transcript
WBPaper00057265:metaformin_downregulated_OP50
WBPaper00058725:sftb-1(cer6)_downregulated
WBPaper00058948:npr-8(ok1439)_downregulated_OP50
WBPaper00058948:PA14_downregulated
WBPaper00059117:B.subtilis_upregulated
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059728:5ug_cholesterol_upregulated
WBPaper00059728:20ug_cholesterol_upregulated
WBPaper00059735:glucose_downregulated_lpin-1(RNAi)
WBPaper00059735:glucose_downregulated_N2
WBPaper00059987:Wounding_upregulated
WBPaper00060014:set-2(zr2012)_downregulated
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00060909:atfs-1(et18)_downregulated
WBPaper00061007:HB101_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061007:X.citri_upregulated
WBPaper00061274:hypergravity_15xg_downregulated
WBPaper00061340:ant_arc_V
WBPaper00061340:Arcade_cell_anterior_and_posterior
WBPaper00061340:hyp1_hyp2
WBPaper00061340:Posterior_arcade_cell
WBPaper00061390:daf-22(ok693)_ascarosides_downregulated
WBPaper00061527:pqn-31-ttr-21
WBPaper00061613:human-amyloid-beta_alpha-Synuclein(A53T)_downregulated
WBPaper00061613:human-amyloid-beta_downregulated
WBPaper00061995:mter-4(syb3662syb3403)_downregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064716:paraquat_downregulated
WBPaper00064721:fasn-1(g14)_downregulated_starved
WBPaper00064788:ketamine_downregulated
WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
WBPaper00064992:Eugenol_upregulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065096:npr-8(ok1439)_upregulated_Day1_25C
WBPaper00065331:100nM-ivermectin_upregulated
WBPaper00065373:Cisplatin_downregulated_WT
WBPaper00065623:37
WBPaper00065841:9_0
WBPaper00065841:9_1
WBPaper00065841:9_2
WBPaper00065841:15_0
WBPaper00065841:24_1
WBPaper00065841:27_0
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066110:Doxorubicin_upregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00066204:CdCl2_upregulated_mRNA
WBPaper00066232:ash-2(RNAi)_downregulated_WT
cgc4489_group_12
WBPaper00026980:intestine_enriched
WBPaper00031532:Larva_Pan_Neuronal_Depleted
WBPaper00036286:Pattern_C
WBPaper00036375:depleted_in_PVD_OLL
WBPaper00038172:crh-1null_up_regulated
WBPaper00038172:tax-6null_up_regulated
WBPaper00040963:TA100_up
WBPaper00040963:TA200_up
WBPaper00040963:TA300_up
WBPaper00041207:CE_dauer_up
WBPaper00041267:SpaceFlight_Downregulated
WBPaper00041906:I-3690_vs_OP50_3d
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00042178:hlh-29(tm284)_upregulated
WBPaper00042274:tbx-2(bx59)_upregulated
WBPaper00045673:colistin_downregulated
WBPaper00045960:L4-lethargus_upregulated
WBPaper00047070:N2_starvation_upregulated
WBPaper00047070:N2_UV_upregulated
WBPaper00048624:hlh-25(ok1710)_upregulated
WBPaper00048989:N2_allantoin_downregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
[cgc6390]:Cluster_A
InteractionWBInteraction000031376
WBInteraction000183954
WBInteraction000247932
WBInteraction000267710
WBInteraction000334355
WBInteraction000369271
WBInteraction000395144
WBInteraction000401073
WBInteraction000427466
WBInteraction000432805
WBInteraction000539501
Map_infoMapVPosition4.72353Error0.000501
PositivePositive_cloneR90Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00065331
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene