WormBase Tree Display for Gene: WBGene00011267

WBGene00011267 SMap: S_parent: Sequence: R17
  Identity: Version: 2
    Name: CGC_name: fbxb-85 Person_evidence: WBPerson655
      Sequence_name: R17.1
      Molecular_name: R17.1
        R17.1.1
        CE16314
      Other_name: CELE_R17.1 Accession_evidence: NDB BX284603
      Public_name: fbxb-85
    DB_info: Database: AceView gene 3L936
        WormQTL gene WBGene00011267
        WormFlux gene WBGene00011267
        NDB locus_tag CELE_R17.1
        Panther gene CAEEL|WormBase=WBGene00011267|UniProtKB=O18004
          family PTHR22899
        NCBI gene 187876
        RefSeq protein NM_066988.3
        TrEMBL UniProtAcc O18004
        UniProt_GCRP UniProtAcc O18004
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 12 Dec 2005 17:22:20 WBPerson2970 Name_change: CGC_name: fbxb-85
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fbxb
    Allele (24)
    RNASeq_FPKM (74)
    Ortholog (47)
    Paralog (144)
    Structured_description: Concise_description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function. Paper_evidence: WBPaper00012854
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in several structures, including ABplaapaaa; ABplapaaaap; ABplapaaapa; AVA; and NSM based on tiling array and single-cell RNA-seq studies. Is affected by several genes including daf-2; rrf-3; and eat-2 based on tiling array; RNA-seq; and microarray studies. Is affected by eleven chemicals including Mercuric Chloride; rotenone; and Psoralens based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box domain; F-box associated; and F-box associated domain, type 2. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: R17.1
    Corresponding_transcript: R17.1.1
    Associated_feature: WBsf651488
      WBsf655482
      WBsf227529
      WBsf227530
      WBsf227531
      WBsf227532
  Experimental_info: RNAi_result: WBRNAi00034951 Inferred_automatically: RNAi_primary
      WBRNAi00006324 Inferred_automatically: RNAi_primary
      WBRNAi00052002 Inferred_automatically: RNAi_primary
      WBRNAi00017886 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1025146
      Expr1034946
      Expr1155644
      Expr2011686
      Expr2029925
    Microarray_results (17)
    Expression_cluster: WBPaper00032528:L3_depleted
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVA-neuron_embryo_enriched
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
      WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
      WBPaper00044316:HgCl2_20uM_downregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00045974:NSM_enriched_totalRNA_tiling
      WBPaper00050163:chd-3(eh4)_upregulated_24-cell-embryo
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00051352:Long-Term-Association-Memory_upregulated
      WBPaper00053289:DREAM-target
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053664:ins-11(tm1053)_downregulated
      WBPaper00055013:hmg-3(bar24)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Psora_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055386:daf-2(e1370)_downregulated
      WBPaper00055386:eat-2(ad465)_downregulated
      WBPaper00055827:daf-2(e1370)_upregulated
      WBPaper00055827:pfd-6(gk493446)_upregulated
      WBPaper00055971:nhl-2(ok818)_20C_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056284:ints-5(RNAi)_upregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056809:smn-1(ok355)_upregulated
      WBPaper00057068:ints-4(RNAi)_upregulated
      WBPaper00057143:ztf-11(RNAi)_downregulated
      WBPaper00057288:Cold_upregulated_transcript
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00058691:cfp-1(tm6369)_upregulated
      WBPaper00058691:set-2(bn129)_upregulated
      WBPaper00058691:sin-3(tm1276)_upregulated
      WBPaper00058725:sftb-1(cer6)_upregulated
      WBPaper00058725:sftb-1(cer39)_upregulated
      WBPaper00059334:sacy-1(depletion)_regulated
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00059728:5ug_cholesterol_downregulated
      WBPaper00059728:20ug_cholesterol_downregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060445:ikb-1(nr2027)_downregulated_L1
      WBPaper00060445:nfki-1(cer1)_downregulated_L1
      WBPaper00060764:swsn-1(os22ts)_upregulated
      WBPaper00060886:spr-5(by101);met-2(n4256)_downregulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061203:spr-1(ok2144)_downregulated
      WBPaper00061340:Neuroblast_ADE_ADA
      WBPaper00061340:Neuroblast_AIZ_FLP
      WBPaper00061340:Neuroblast_ASH_RIB
      WBPaper00061340:Neuroblast_IL1_IL2
      WBPaper00061340:Neuroblast_PVC_LUA
      WBPaper00061340:Parents_of_U_F_B_DVA
      WBPaper00061340:Parent_of_hyp3_ILsoDx
      WBPaper00061340:PVQ_parent
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061424:Diet_MYb120_downregulated
      WBPaper00061527:fbxb-13-fbxb-24
      WBPaper00062146:MOG-7-degron_1h_regulated
      WBPaper00062146:MOG-7-degron_2h_regulated
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062456:doxycycline_downregulated_CB4856_transcript
      WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:25C_vs_20C_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065749:Heat-Shock_downregulated_endu-2(tm4977)
      WBPaper00065749:Heat-Shock_downregulated_N2
      WBPaper00065841:51_0
      WBPaper00065841:129_0
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066110:Doxorubicin_downregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066232:hsf-1(RNAi)_downregulated_ash-2
      cgc4489_group_13
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00027111:rde-3(ne298)_upregulated
      WBPaper00027111:rrf-3(pk1426)_upregulated
      WBPaper00034757:up_by_oxidative_stress
      WBPaper00036286:Pattern_D
      WBPaper00038427:lin-54_embryo_changed
      WBPaper00040876:mir-35_upregulated
      WBPaper00041960:N2_fasting_upregulated_9hto12h
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00046853:AOBr_M.aeruginosa-batch-culture_upregulated
      WBPaper00048567:dnj-14_downregulated
      WBPaper00048989:N2_rapamycin_downregulated
      WBPaper00056330:mrps-5(RNAi)_downregulated
      [cgc5767]:cluster_21
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_ET
      [cgc5767]:expression_class_ET_max(66_min)
      [cgc5767]:expression_class_E_pi(23_min)
      [cgc5767]:expression_class_SE
      [cgc5767]:expression_class_SET
      [cgc5767]:expression_class_SE_pi(23_min)
    Interaction (41)
  Map_info: Map: III Position: 5.42989 Error: 0.006803
    Positive: Positive_clone: R17 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00012854
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene