WormBase Tree Display for Gene: WBGene00010976

WBGene00010976 SMap: S_parent: Sequence: R02D5
  Identity: Version: 1
    Name: Sequence_name: R02D5.1
      Molecular_name: R02D5.1
        R02D5.1.1
        CE12486
      Other_name: CELE_R02D5.1 Accession_evidence: NDB BX284605
      Public_name: R02D5.1
    DB_info: Database: AceView gene 5O989
        WormQTL gene WBGene00010976
        WormFlux gene WBGene00010976
        NDB locus_tag CELE_R02D5.1
        NCBI gene 179956
        RefSeq protein NM_074194.4
        TREEFAM TREEFAM_ID TF317483
        TrEMBL UniProtAcc Q21636
        UniProt_GCRP UniProtAcc Q21636
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (31)
    RNASeq_FPKM (74)
    GO_annotation (3)
    Ortholog (21)
    Structured_description: Automated_description: Enriched in several structures, including ABarppaapp; ABarpppapp; ABplapaaaap; ABplapaaapa; and neurons based on microarray; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; eat-2; and sek-1 based on microarray; RNA-seq; and tiling array studies. Is affected by eleven chemicals including 1-methylnicotinamide; Cry5B; and Zidovudine based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: R02D5.1
    Corresponding_transcript: R02D5.1.1
    Other_sequence: CBC13638_1
    Associated_feature: WBsf647539
      WBsf1002043
      WBsf1002044
      WBsf1002045
      WBsf1020860
      WBsf1020861
      WBsf1020862
      WBsf232934
  Experimental_info: RNAi_result: WBRNAi00017318 Inferred_automatically: RNAi_primary
      WBRNAi00051131 Inferred_automatically: RNAi_primary
      WBRNAi00034533 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1018701
      Expr1034812
      Expr1154839
      Expr2005318
      Expr2023538
    Drives_construct: WBCnstr00031022
    Construct_product: WBCnstr00031022
    Microarray_results (20)
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
      WBPaper00044260:1-methylnicotinamide_downregulated
      WBPaper00044260:nicotic-acid_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045316:prg-1_upregulated_L1
      WBPaper00045316:prg-1_upregulated_L2
      WBPaper00045316:prg-1_upregulated_L3
      WBPaper00045316:prg-1_upregulated_L4
      WBPaper00048988:neuron_expressed
      WBPaper00049736:15deg-then-25deg(12hr)_upregulated_N2
      WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
      WBPaper00050094:mes-6(bn66)_upregulated
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050468:hlh-30-dependent_Cry5B_regulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00051265:F4_morc-1(tm6048)_upregulated
      WBPaper00051352:Long-Term-Association-Memory_upregulated
      WBPaper00051558:aging_regulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053321:PGCs_depleted_NuGen
      WBPaper00053388:dauer_regulated_Cluster4
      WBPaper00053599:oocyte_vs_mitosis_downregulated
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00053814:15C_downregulated_OP50
      WBPaper00054493:hpl-2(tm1489)_upregulated
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00055354:Rapamycin-Psora_downregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055386:eat-2(ad465)_downregulated
      WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_upregulated_N2
      WBPaper00056139:soil-microbiota_upregulated
      WBPaper00056161:hermaphrodite_enriched_siRNA
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
      WBPaper00057006:DietaryRestriction_downregulated
      WBPaper00057140:meg-3(tm4259)_meg-4(ax2026)_downregulated
      WBPaper00057161:meg-3(tm4259)_meg-4(ax2026)_downregulated_endo-siRNA_targets
      WBPaper00057162:meg-3_meg-4_downregulated_sRNA
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058958:100mGy-irradiation-72h_upregulated
      WBPaper00059471:EGL-43_interacting
      WBPaper00059739:hira-1(gk835598)_upregulated_adult
      WBPaper00059763:neuron_expressed
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061203:let-418(n3536)_upregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:ALM_BDU
      WBPaper00061340:ALN
      WBPaper00061340:AVE
      WBPaper00061340:AVH
      WBPaper00061340:DB
      WBPaper00061340:Neuroblast_ADE_ADA
      WBPaper00061340:Neuroblast_AIZ_FLP
      WBPaper00061340:Neuroblast_ALM_BDU
      WBPaper00061340:Neuroblast_PVC_LUA
      WBPaper00061340:PLM_ALN_grandparent
      WBPaper00061340:PLM_ALN_great_grandparent
      WBPaper00061340:PVR
      WBPaper00061340:RMED
      WBPaper00061340:SIA
      WBPaper00061340:SMB
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated
      WBPaper00061479:hda-1(ne4748)_upregulated
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061527:chd-7_16664-jmjd-3.1
      WBPaper00061527:ldb-1_2877-scd-1_3086
      WBPaper00061651:PVN_enriched
      WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062534:fat-P-80_downregulated
      WBPaper00062590:Aging_upregulated_intestine
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00064871:hypoxia_downregulated_F2
      WBPaper00065158:25C_vs_15C_upregulated_WholeAnimal
      WBPaper00065258:anchor-cell_enriched
      WBPaper00065835:Day11_vs_Day1_upregulated
      WBPaper00065975:P-body_vs_oocyte_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066005:RAGA-1_degradation_somatic_upregulated
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      cgc4386_cluster_6_3
      cgc4489_group_20
      WBPaper00025032:cluster_5
      WBPaper00025032:cluster_30
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00027342:alpha-Synuclein(A53T)_downregulated
      WBPaper00029437:dcr-1_upregulated
      WBPaper00030985:Photorhabdus_luminescens_upregulated
      WBPaper00031003:0hr_muscle_depleted
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00035227:heat_shock_regulated
      WBPaper00036286:Pattern_F
      WBPaper00036383:ash-2_Day8_regulated
      WBPaper00040210:Chlorpyrifos_16C_regulated
      WBPaper00040210:Diazinon_24C_regulated
      WBPaper00041174:environmental
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_and_environmental
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_24h
      WBPaper00041960:daf-16_fasting_upregulated
      WBPaper00041960:jun-1_fasting_upregulated
      WBPaper00041960:kgb-1_fasting_upregulated
      WBPaper00041960:N2_fasting_upregulated
      WBPaper00041960:N2_fasting_upregulated_9hto12h
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00046853:AOBr_M.aeruginosa-batch-culture_upregulated
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:cluster_13
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(41_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_ME
    Interaction (72)
  Map_info: Positive: Positive_clone: R02D5 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 6.43001
  Method: Gene