WormBase Tree Display for Gene: WBGene00010813
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| WBGene00010813 | SMap | S_parent | Sequence | CHROMOSOME_III | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | pitp-1 | Person_evidence | WBPerson284 | |||||
| WBPerson433 | |||||||||
| Sequence_name | M01F1.7 | ||||||||
| Molecular_name | M01F1.7 | ||||||||
| M01F1.7.1 | |||||||||
| CE33673 | |||||||||
| Other_name | CELE_M01F1.7 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | pitp-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 29 Oct 2010 15:41:12 | WBPerson2970 | Name_change | CGC_name | pitp-1 | ||||
| Sequence_name | M01F1.7 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pitp | ||||||||
| Allele (124) | |||||||||
| Strain | WBStrain00022698 | ||||||||
| WBStrain00022699 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (45) | |||||||||
| Paralog | WBGene00022155 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00021854 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | pitp-1 encodes a phosphatidylinositol transfer protein, with a C-terminal DDHD domain, that is orthologous to RETINAL DEGENERATION B (RDGB) in D. melanogaster, as well as other orthologs in mammals (NIR1-3); pitp-1 is expressed in the egg membrane, the germline, the spermatheca and three pairs of head neurons; PITP-1 is predicted to mediate PIP(2) signalling in either neuronal function or cytokinesis. | Paper_evidence | WBPaper00004403 | |||||
| WBPaper00004651 | |||||||||
| WBPaper00005654 | |||||||||
| WBPaper00012751 | |||||||||
| WBPaper00012871 | |||||||||
| WBPaper00013030 | |||||||||
| WBPaper00013086 | |||||||||
| WBPaper00013591 | |||||||||
| WBPaper00023591 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 08 Nov 2010 00:00:00 | ||||||||
| Automated_description | Predicted to enable phospholipid binding activity and phospholipid transporter activity. Predicted to be involved in intermembrane lipid transfer and phospholipid transport. Located in ciliary transition zone and synapse. Expressed in ciliated neurons. Human ortholog(s) of this gene implicated in cone-rod dystrophy 5. Is an ortholog of human PITPNM1 (phosphatidylinositol transfer protein membrane associated 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111010 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:21043) | ||||
| Molecular_info | Corresponding_CDS | M01F1.7 | |||||||
| Corresponding_CDS_history | M01F1.7:wp98 | ||||||||
| Corresponding_transcript | M01F1.7.1 | ||||||||
| Other_sequence (18) | |||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00067300 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00017105 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00067057 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00050773 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00050774 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00085867 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006068 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034363 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001081 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00007157 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9287 | ||||||||
| Expr15667 | |||||||||
| Expr1016405 | |||||||||
| Expr1034740 | |||||||||
| Expr1154468 | |||||||||
| Expr2014936 | |||||||||
| Expr2033171 | |||||||||
| Drives_construct | WBCnstr00008579 | ||||||||
| WBCnstr00008581 | |||||||||
| WBCnstr00013876 | |||||||||
| WBCnstr00031130 | |||||||||
| WBCnstr00042468 | |||||||||
| Construct_product | WBCnstr00008581 | ||||||||
| WBCnstr00008585 | |||||||||
| WBCnstr00013876 | |||||||||
| WBCnstr00031130 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (143) | |||||||||
| Interaction (15) | |||||||||
| Map_info | Map | III | Position | -5.98197 | Error | 0.072065 | |||
| Positive | Positive_clone | M01F1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (11) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
