WormBase Tree Display for Gene: WBGene00010670
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| WBGene00010670 | SMap | S_parent | Sequence | K08E4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | tmed-1 | Person_evidence | WBPerson451 | |||||
| Sequence_name | K08E4.6 | ||||||||
| Molecular_name | K08E4.6 | ||||||||
| K08E4.6.1 | |||||||||
| CE06146 | |||||||||
| Other_name | CELE_K08E4.6 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | tmed-1 | ||||||||
| DB_info | Database | AceView | gene | 4M842 | |||||
| WormQTL | gene | WBGene00010670 | |||||||
| WormFlux | gene | WBGene00010670 | |||||||
| NDB | locus_tag | CELE_K08E4.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00010670|UniProtKB=Q21336 | |||||||
| family | PTHR22811 | ||||||||
| NCBI | gene | 178145 | |||||||
| RefSeq | protein | NM_069887.6 | |||||||
| TrEMBL | UniProtAcc | Q21336 | |||||||
| UniProt_GCRP | UniProtAcc | Q21336 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 09 Jan 2019 16:22:24 | WBPerson1983 | Name_change | CGC_name | tmed-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tmed | ||||||||
| Allele (15) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00071304 | ||||||||
| 00071305 | |||||||||
| 00071306 | |||||||||
| 00071307 | |||||||||
| 00071308 | |||||||||
| 00071309 | |||||||||
| 00071310 | |||||||||
| 00071311 | |||||||||
| 00071312 | |||||||||
| 00105770 | |||||||||
| Ortholog (44) | |||||||||
| Paralog | WBGene00004766 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00007743 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00009829 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00011606 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00013360 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00019003 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022255 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Involved in IRE1-mediated unfolded protein response. Predicted to be located in intracellular membrane-bounded organelle. Is an ortholog of human TMED1 (transmembrane p24 trafficking protein 1) and TMED5 (transmembrane p24 trafficking protein 5). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K08E4.6 | |||||||
| Corresponding_transcript | K08E4.6.1 | ||||||||
| Other_sequence (40) | |||||||||
| Associated_feature | WBsf652274 | ||||||||
| WBsf230958 | |||||||||
| WBsf230959 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00062313 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00050297 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00050296 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034140 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001946 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1028245 | ||||||||
| Expr1034666 | |||||||||
| Expr1153996 | |||||||||
| Expr2004926 | |||||||||
| Expr2023148 | |||||||||
| Drives_construct | WBCnstr00031236 | ||||||||
| Construct_product | WBCnstr00031236 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (111) | |||||||||
| Interaction | WBInteraction000213627 | ||||||||
| WBInteraction000272407 | |||||||||
| WBInteraction000272672 | |||||||||
| WBInteraction000288417 | |||||||||
| WBInteraction000297288 | |||||||||
| WBInteraction000313543 | |||||||||
| WBInteraction000386883 | |||||||||
| WBInteraction000404109 | |||||||||
| WBInteraction000551622 | |||||||||
| WBInteraction000582351 | |||||||||
| Map_info | Map | IV | Position | 5.64825 | |||||
| Positive | Positive_clone | K08E4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061547 | |||||||||
| WBPaper00065655 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
