WormBase Tree Display for Gene: WBGene00010621
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WBGene00010621 | SMap | S_parent | Sequence | K07A12 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | egg-6 | Person_evidence | WBPerson597 | |||||
Sequence_name | K07A12.2 | ||||||||
Molecular_name | K07A12.2 | ||||||||
K07A12.2.1 | |||||||||
CE11866 | |||||||||
Other_name | CELE_K07A12.2 | Accession_evidence | NDB | BX284601 | |||||
Public_name | egg-6 | ||||||||
DB_info | Database | AceView | gene | 1J254 | |||||
WormQTL | gene | WBGene00010621 | |||||||
WormFlux | gene | WBGene00010621 | |||||||
NDB | locus_tag | CELE_K07A12.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00010621|UniProtKB=P90920 | |||||||
family | PTHR45617 | ||||||||
NCBI | gene | 172670 | |||||||
RefSeq | protein | NM_059947.6 | |||||||
SwissProt | UniProtAcc | P90920 | |||||||
UniProt_GCRP | UniProtAcc | P90920 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 12 Aug 2011 13:38:18 | WBPerson2970 | Name_change | CGC_name | egg-6 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | egg | ||||||||
Allele (59) | |||||||||
Strain | WBStrain00036254 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00049503 | ||||||||
00049504 | |||||||||
00049505 | |||||||||
Ortholog (25) | |||||||||
Paralog (12) | |||||||||
Structured_description | Concise_description | egg-6 encodes an extracellular leucine-rich repeat protein; egg-6 is required for proper organization of the apical extracellular matrix. | Paper_evidence | WBPaper00040698 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 27 Jan 2012 00:00:00 | ||||||||
Automated_description | Predicted to be located in apical plasma membrane. Expressed in excretory system; neurons; pharynx; rectal epithelial cell; and vulva. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | K07A12.2 | |||||||
Corresponding_transcript | K07A12.2.1 | ||||||||
Other_sequence | Oden_isotig14181 | ||||||||
JO470494.1 | |||||||||
JI165321.1 | |||||||||
PSC01646_2 | |||||||||
AYC02414_1 | |||||||||
Acan_isotig15286 | |||||||||
CRC00172_1 | |||||||||
Oden_isotig14180 | |||||||||
CR11644 | |||||||||
EX008303.1 | |||||||||
JI478564.1 | |||||||||
CBC01313_1 | |||||||||
HBC10552_1 | |||||||||
CR01385 | |||||||||
DVC01997_1 | |||||||||
HC06163 | |||||||||
CR00458 | |||||||||
JI165539.1 | |||||||||
TIC00080_1 | |||||||||
HBC06111_1 | |||||||||
Dviv_isotig26320 | |||||||||
CGC00952_1 | |||||||||
AE03647 | |||||||||
AJ616469.1 | |||||||||
JI165521.1 | |||||||||
EV850694.1 | |||||||||
Hbac_isotig01254 | |||||||||
GW412189.1 | |||||||||
HCC03428_1 | |||||||||
FG979063.1 | |||||||||
CRC04260_1 | |||||||||
Associated_feature (18) | |||||||||
Experimental_info | RNAi_result | WBRNAi00003949 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00025894 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00085833 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00025895 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00000335 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00034037 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00050096 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr9900 | ||||||||
Expr9949 | |||||||||
Expr1010463 | |||||||||
Expr1034639 | |||||||||
Expr1153798 | |||||||||
Expr2011204 | |||||||||
Expr2029440 | |||||||||
Drives_construct | WBCnstr00014386 | ||||||||
WBCnstr00031280 | |||||||||
Construct_product | WBCnstr00010001 | ||||||||
WBCnstr00014386 | |||||||||
WBCnstr00031280 | |||||||||
Microarray_results | SMD_K07A12.2 | ||||||||
173039_s_at | |||||||||
194069_s_at | |||||||||
A_12_P103947 | |||||||||
Aff_K07A12.2 | |||||||||
GPL13394_WBGene00010621 | |||||||||
GPL13914_K07A12.2 | |||||||||
GPL14144_K07A12.2_2270-2329_0.912_10_B | |||||||||
GPL14144_K07A12.2_2355-2414_0.919_6_A | |||||||||
GPL14144_K07A12.2_2480-2539_0.909_14_C | |||||||||
GPL19516_CGZ0028115 | |||||||||
GPL21109_K07A12.2 | |||||||||
GPL3518_CE11866 | |||||||||
GPL8304_CE_WBGene00010621_A | |||||||||
GPL8673_K07A12_2P01761 | |||||||||
GPL8673_K07A12_2P02138 | |||||||||
GPL8673_K07A12_2P02801 | |||||||||
GPL9450_K07A12.2 | |||||||||
cea2.p.14299 | |||||||||
Expression_cluster (201) | |||||||||
Interaction (101) | |||||||||
Map_info | Map | I | Position | 3.01725 | Error | 9.1e-05 | |||
Positive | Positive_clone | K07A12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 5734 | |||||||
5735 | |||||||||
Pos_neg_data | 10959 | ||||||||
10960 | |||||||||
10961 | |||||||||
10962 | |||||||||
10963 | |||||||||
10964 | |||||||||
10965 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038651 | ||||||||
WBPaper00040698 | |||||||||
WBPaper00042709 | |||||||||
WBPaper00048267 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00061137 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |