WormBase Tree Display for Gene: WBGene00010621
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| WBGene00010621 | SMap | S_parent | Sequence | K07A12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | egg-6 | Person_evidence | WBPerson597 | |||||
| Sequence_name | K07A12.2 | ||||||||
| Molecular_name | K07A12.2 | ||||||||
| K07A12.2.1 | |||||||||
| CE11866 | |||||||||
| Other_name | CELE_K07A12.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | egg-6 | ||||||||
| DB_info | Database | AceView | gene | 1J254 | |||||
| WormQTL | gene | WBGene00010621 | |||||||
| WormFlux | gene | WBGene00010621 | |||||||
| NDB | locus_tag | CELE_K07A12.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00010621|UniProtKB=P90920 | |||||||
| family | PTHR45617 | ||||||||
| NCBI | gene | 172670 | |||||||
| RefSeq | protein | NM_059947.6 | |||||||
| SwissProt | UniProtAcc | P90920 | |||||||
| UniProt_GCRP | UniProtAcc | P90920 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 12 Aug 2011 13:38:18 | WBPerson2970 | Name_change | CGC_name | egg-6 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | egg | ||||||||
| Allele | WBVar00656529 | ||||||||
| WBVar00656530 | |||||||||
| WBVar00656531 | |||||||||
| WBVar00656532 | |||||||||
| WBVar01499340 | |||||||||
| WBVar00656533 | |||||||||
| WBVar01499341 | |||||||||
| WBVar00656534 | |||||||||
| WBVar00656535 | |||||||||
| WBVar00656536 | |||||||||
| WBVar00656537 | |||||||||
| WBVar00656538 | |||||||||
| WBVar01432348 | |||||||||
| WBVar00656539 | |||||||||
| WBVar01694834 | |||||||||
| WBVar00656540 | |||||||||
| WBVar00656541 | |||||||||
| WBVar00656542 | |||||||||
| WBVar00656543 | |||||||||
| WBVar00340543 | |||||||||
| WBVar00656544 | |||||||||
| WBVar00340544 | |||||||||
| WBVar00656545 | |||||||||
| WBVar00656546 | |||||||||
| WBVar00340545 | |||||||||
| WBVar00340546 | |||||||||
| WBVar00656547 | |||||||||
| WBVar00656548 | |||||||||
| WBVar00340547 | |||||||||
| WBVar00656549 | |||||||||
| WBVar00340548 | |||||||||
| WBVar00340549 | |||||||||
| WBVar00656550 | |||||||||
| WBVar00656551 | |||||||||
| WBVar00340550 | |||||||||
| WBVar00340551 | |||||||||
| WBVar00656552 | |||||||||
| WBVar00340552 | |||||||||
| WBVar00340553 | |||||||||
| WBVar00340554 | |||||||||
| WBVar00340555 | |||||||||
| WBVar00340556 | |||||||||
| WBVar01500105 | |||||||||
| WBVar01499739 | |||||||||
| WBVar00059240 | |||||||||
| WBVar00155267 | |||||||||
| WBVar00155268 | |||||||||
| WBVar01909989 | |||||||||
| WBVar01499786 | |||||||||
| WBVar01422310 | |||||||||
| WBVar01499054 | |||||||||
| WBVar01422313 | |||||||||
| WBVar01421300 | |||||||||
| WBVar02128078 | |||||||||
| WBVar00092717 | |||||||||
| WBVar00600737 | |||||||||
| WBVar00301602 | |||||||||
| WBVar00538092 | |||||||||
| WBVar01498959 | |||||||||
| Strain | WBStrain00036254 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00049503 | ||||||||
| 00049504 | |||||||||
| 00049505 | |||||||||
| Ortholog (25) | |||||||||
| Paralog (12) | |||||||||
| Structured_description | Concise_description | egg-6 encodes an extracellular leucine-rich repeat protein; egg-6 is required for proper organization of the apical extracellular matrix. | Paper_evidence | WBPaper00040698 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 27 Jan 2012 00:00:00 | ||||||||
| Automated_description | Predicted to be located in apical plasma membrane. Expressed in excretory system; neurons; pharynx; rectal epithelial cell; and vulva. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K07A12.2 | |||||||
| Corresponding_transcript | K07A12.2.1 | ||||||||
| Other_sequence (31) | |||||||||
| Associated_feature (18) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00003949 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00025894 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00085833 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00025895 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000335 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034037 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00050096 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9900 | ||||||||
| Expr9949 | |||||||||
| Expr1010463 | |||||||||
| Expr1034639 | |||||||||
| Expr1153798 | |||||||||
| Expr2011204 | |||||||||
| Expr2029440 | |||||||||
| Drives_construct | WBCnstr00014386 | ||||||||
| WBCnstr00031280 | |||||||||
| Construct_product | WBCnstr00010001 | ||||||||
| WBCnstr00014386 | |||||||||
| WBCnstr00031280 | |||||||||
| Microarray_results | SMD_K07A12.2 | ||||||||
| 173039_s_at | |||||||||
| 194069_s_at | |||||||||
| A_12_P103947 | |||||||||
| Aff_K07A12.2 | |||||||||
| GPL13394_WBGene00010621 | |||||||||
| GPL13914_K07A12.2 | |||||||||
| GPL14144_K07A12.2_2270-2329_0.912_10_B | |||||||||
| GPL14144_K07A12.2_2355-2414_0.919_6_A | |||||||||
| GPL14144_K07A12.2_2480-2539_0.909_14_C | |||||||||
| GPL19516_CGZ0028115 | |||||||||
| GPL21109_K07A12.2 | |||||||||
| GPL3518_CE11866 | |||||||||
| GPL8304_CE_WBGene00010621_A | |||||||||
| GPL8673_K07A12_2P01761 | |||||||||
| GPL8673_K07A12_2P02138 | |||||||||
| GPL8673_K07A12_2P02801 | |||||||||
| GPL9450_K07A12.2 | |||||||||
| cea2.p.14299 | |||||||||
| Expression_cluster (201) | |||||||||
| Interaction (101) | |||||||||
| Map_info | Map | I | Position | 3.01725 | Error | 9.1e-05 | |||
| Positive | Positive_clone | K07A12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5734 | |||||||
| 5735 | |||||||||
| Pos_neg_data | 10959 | ||||||||
| 10960 | |||||||||
| 10961 | |||||||||
| 10962 | |||||||||
| 10963 | |||||||||
| 10964 | |||||||||
| 10965 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038651 | ||||||||
| WBPaper00040698 | |||||||||
| WBPaper00042709 | |||||||||
| WBPaper00048267 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061137 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
