WormBase Tree Display for Gene: WBGene00010442

WBGene00010442 SMap: S_parent: Sequence: JC8
  Identity: Version: 2
    Name: CGC_name: bus-12 Paper_evidence: WBPaper00037686
          Person_evidence: WBPerson261
      Sequence_name: JC8.12
      Molecular_name: JC8.12a
        JC8.12a.1
        CE29812
        JC8.12b
        CE39741
        JC8.12b.1
      Other_name: CELE_JC8.12 Accession_evidence: NDB BX284604
      Public_name: bus-12
    DB_info: Database: AceView gene 4O23
        WormQTL gene WBGene00010442
        WormFlux gene WBGene00010442
        NDB locus_tag CELE_JC8.12
        Panther gene CAEEL|WormBase=WBGene00010442|UniProtKB=G5ECW1
          family PTHR11132
        NCBI gene 178283
        RefSeq protein NM_001047493.6
            NM_001047492.4
        TREEFAM TREEFAM_ID TF318749
        TrEMBL UniProtAcc Q2EEM9
            G5ECW1
        UniProt_GCRP UniProtAcc G5ECW1
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:51 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 16 Nov 2010 10:48:21 WBPerson2970 Event: Acquires_merge: WBGene00044625
      Acquires_merge: WBGene00044625
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: bus
    Allele (70)
    Strain: WBStrain00004664
      WBStrain00004703
      WBStrain00004723
    RNASeq_FPKM (74)
    GO_annotation: 00012631
      00012632
      00012633
      00012634
    Contained_in_operon: CEOP4678
    Ortholog (30)
    Paralog: WBGene00005025 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00008237 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00011882 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00021637 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: bus-12 encodes a predicted nucleotide-sugar transporter and is most similar to sqv-7 within the elegans genome, which encodes a protein that can transport UDP-glucuronic acid, UDP-N acetylgalactosamine, and UDP-galactose, when expressed in yeast cells, and UDP-galactose when expressed in canine cells; bus-12 mutants show little or no infection when grown in the presence of the nematode-specific pathogen Microbacterium nematophilum, do not show the tail-swelling response to infection and are resistant to bacterial biofilm formation by Yersinia species; bus-12 mutants are also impaired in contact recognition of hermaphrodites by males during mating; bus-12 is expressed in the seam cells. Paper_evidence: WBPaper00026735
            WBPaper00029153
            WBPaper00037686
          Curator_confirmed: WBPerson324
          Date_last_updated: 02 Nov 2011 00:00:00
      Automated_description: Predicted to enable antiporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in Golgi apparatus. Expressed in intestine and seam cell. Is an ortholog of human SLC35D3 (solute carrier family 35 member D3). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: JC8.12a
      JC8.12b
    Corresponding_CDS_history: JC8.12:wp68
    Corresponding_transcript: JC8.12a.1
      JC8.12b.1
    Other_sequence: Dviv_isotig09678
      Tcir_isotig27790
      Oden_isotig25300
      CRC06637_1
      HBC26974_1
      ES413579.1
      Dviv_isotig09677
      CR06947
    Associated_feature: WBsf646518
      WBsf660880
      WBsf998368
      WBsf998369
      WBsf229405
  Experimental_info: RNAi_result: WBRNAi00111016 Inferred_automatically: RNAi_primary
      WBRNAi00110988 Inferred_automatically: RNAi_primary
      WBRNAi00049568 Inferred_automatically: RNAi_primary
      WBRNAi00033791 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr9276
      Expr1021323
      Expr1153293
      Expr2009683
      Expr2027922
    Drives_construct: WBCnstr00007660
      WBCnstr00007661
      WBCnstr00031414
    Construct_product: WBCnstr00007660
      WBCnstr00007661
      WBCnstr00031414
    Microarray_results (22)
    Expression_cluster (163)
    SAGE_tag: SAGE:gatgagcaaagcataat Strand: Sense
        Unambiguously_mapped
      SAGE:gatgagcaaa Strand: Sense
        Unambiguously_mapped
      SAGE:gtcccttcacaatttct Strand: Antisense
      SAGE:cactctttcaactcgct Strand: Sense
        Unambiguously_mapped
      SAGE:atagtcttcgtcgctgc Strand: Sense
        Unambiguously_mapped
      SAGE:tatatgatcacttcagc Strand: Sense
        Unambiguously_mapped
      SAGE:atagtcttcg Strand: Sense
        Unambiguously_mapped
    WBProcess: WBbiopr:00000039
  Map_info: Map: IV Position: 8.50566 Error: 0.003333
    Positive: Positive_clone: JC8 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5467
    Pseudo_map_position
  Reference (11)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene