WormBase Tree Display for Gene: WBGene00008237
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| WBGene00008237 | SMap | S_parent | Sequence | C50F4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nstp-10 | Person_evidence | WBPerson2553 | |||||
| WBPerson261 | |||||||||
| Sequence_name | C50F4.14 | ||||||||
| Molecular_name | C50F4.14a | ||||||||
| C50F4.14a.1 | |||||||||
| CE30910 | |||||||||
| C50F4.14b | |||||||||
| CE44998 | |||||||||
| C50F4.14b.1 | |||||||||
| Other_name | CELE_C50F4.14 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | nstp-10 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 11 Feb 2011 15:09:46 | WBPerson2970 | Name_change | CGC_name | nstp-10 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nstp | ||||||||
| Allele (29) | |||||||||
| Strain | WBStrain00032828 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00007708 | ||||||||
| 00007709 | |||||||||
| 00091218 | |||||||||
| 00091219 | |||||||||
| 00091220 | |||||||||
| 00091221 | |||||||||
| 00091222 | |||||||||
| 00091223 | |||||||||
| 00091224 | |||||||||
| 00091225 | |||||||||
| Contained_in_operon | CEOP5232 | ||||||||
| Ortholog (35) | |||||||||
| Paralog | WBGene00011882 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WormBase-Compara | |||||||||
| WBGene00005025 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00010442 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00021637 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | The C50F4.14 gene encodes a putative GDP-fucose transporter orthologous to the human GDP-FUCOSE TRANSPORTER 1 gene (LAD II; OMIM:605881), which when mutated leads to congenital disorder of glycosylation, type IIc. | Paper_evidence | WBPaper00004674 | |||||
| Curator_confirmed | WBPerson1823 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable GDP-fucose transmembrane transporter activity and antiporter activity. Predicted to be involved in GDP-fucose import into Golgi lumen and protein O-linked fucosylation. Predicted to be located in Golgi apparatus. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIc. Is an ortholog of human SLC35C1 (solute carrier family 35 member C1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0070255 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:20197) | ||||
| Molecular_info | Corresponding_CDS | C50F4.14a | |||||||
| C50F4.14b | |||||||||
| Corresponding_CDS_history | C50F4.14:wp80 | ||||||||
| C50F4.14a:wp229 | |||||||||
| C50F4.14b:wp229 | |||||||||
| Corresponding_transcript | C50F4.14a.1 | ||||||||
| C50F4.14b.1 | |||||||||
| Other_sequence (42) | |||||||||
| Associated_feature | WBsf652923 | ||||||||
| WBsf669242 | |||||||||
| WBsf669243 | |||||||||
| WBsf669244 | |||||||||
| WBsf669245 | |||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern | Chronogram340 | ||||||||
| Expr5560 | |||||||||
| Expr1024320 | |||||||||
| Expr1033580 | |||||||||
| Expr1146909 | |||||||||
| Expr2014495 | |||||||||
| Expr2032734 | |||||||||
| Drives_construct | WBCnstr00003867 | ||||||||
| WBCnstr00033126 | |||||||||
| Construct_product | WBCnstr00033126 | ||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (96) | |||||||||
| Interaction (47) | |||||||||
| Map_info | Map | V | Position | 2.05035 | Error | 0.00051 | |||
| Positive | Positive_clone | C50F4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029024 | ||||||||
| WBPaper00037686 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
