WormBase Tree Display for Gene: WBGene00010442
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WBGene00010442 | SMap | S_parent | Sequence | JC8 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | bus-12 | Paper_evidence | WBPaper00037686 | |||||
Person_evidence | WBPerson261 | ||||||||
Sequence_name | JC8.12 | ||||||||
Molecular_name | JC8.12a | ||||||||
JC8.12a.1 | |||||||||
CE29812 | |||||||||
JC8.12b | |||||||||
CE39741 | |||||||||
JC8.12b.1 | |||||||||
Other_name | CELE_JC8.12 | Accession_evidence | NDB | BX284604 | |||||
Public_name | bus-12 | ||||||||
DB_info | Database | AceView | gene | 4O23 | |||||
WormQTL | gene | WBGene00010442 | |||||||
WormFlux | gene | WBGene00010442 | |||||||
NDB | locus_tag | CELE_JC8.12 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00010442|UniProtKB=G5ECW1 | |||||||
family | PTHR11132 | ||||||||
NCBI | gene | 178283 | |||||||
RefSeq | protein | NM_001047493.6 | |||||||
NM_001047492.4 | |||||||||
TREEFAM | TREEFAM_ID | TF318749 | |||||||
TrEMBL | UniProtAcc | Q2EEM9 | |||||||
G5ECW1 | |||||||||
UniProt_GCRP | UniProtAcc | G5ECW1 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 16 Nov 2010 10:48:21 | WBPerson2970 | Event | Acquires_merge | WBGene00044625 | ||||
Acquires_merge | WBGene00044625 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | bus | ||||||||
Allele (70) | |||||||||
Strain | WBStrain00004664 | ||||||||
WBStrain00004703 | |||||||||
WBStrain00004723 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (4) | |||||||||
Contained_in_operon | CEOP4678 | ||||||||
Ortholog (30) | |||||||||
Paralog | WBGene00005025 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
WBGene00008237 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00011882 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00021637 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | bus-12 encodes a predicted nucleotide-sugar transporter and is most similar to sqv-7 within the elegans genome, which encodes a protein that can transport UDP-glucuronic acid, UDP-N acetylgalactosamine, and UDP-galactose, when expressed in yeast cells, and UDP-galactose when expressed in canine cells; bus-12 mutants show little or no infection when grown in the presence of the nematode-specific pathogen Microbacterium nematophilum, do not show the tail-swelling response to infection and are resistant to bacterial biofilm formation by Yersinia species; bus-12 mutants are also impaired in contact recognition of hermaphrodites by males during mating; bus-12 is expressed in the seam cells. | Paper_evidence | WBPaper00026735 | |||||
WBPaper00029153 | |||||||||
WBPaper00037686 | |||||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 02 Nov 2011 00:00:00 | ||||||||
Automated_description | Predicted to enable antiporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in Golgi apparatus. Expressed in intestine and seam cell. Is an ortholog of human SLC35D3 (solute carrier family 35 member D3). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | JC8.12a | |||||||
JC8.12b | |||||||||
Corresponding_CDS_history | JC8.12:wp68 | ||||||||
Corresponding_transcript | JC8.12a.1 | ||||||||
JC8.12b.1 | |||||||||
Other_sequence | Dviv_isotig09678 | ||||||||
Tcir_isotig27790 | |||||||||
Oden_isotig25300 | |||||||||
CRC06637_1 | |||||||||
HBC26974_1 | |||||||||
ES413579.1 | |||||||||
Dviv_isotig09677 | |||||||||
CR06947 | |||||||||
Associated_feature | WBsf646518 | ||||||||
WBsf660880 | |||||||||
WBsf998368 | |||||||||
WBsf998369 | |||||||||
WBsf229405 | |||||||||
Experimental_info | RNAi_result | WBRNAi00111016 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00110988 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00049568 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00033791 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr9276 | ||||||||
Expr1021323 | |||||||||
Expr1153293 | |||||||||
Expr2009683 | |||||||||
Expr2027922 | |||||||||
Drives_construct | WBCnstr00007660 | ||||||||
WBCnstr00007661 | |||||||||
WBCnstr00031414 | |||||||||
Construct_product | WBCnstr00007660 | ||||||||
WBCnstr00007661 | |||||||||
WBCnstr00031414 | |||||||||
Microarray_results (22) | |||||||||
Expression_cluster (163) | |||||||||
SAGE_tag | SAGE:gatgagcaaagcataat | Strand | Sense | ||||||
Unambiguously_mapped | |||||||||
SAGE:gatgagcaaa | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:gtcccttcacaatttct | Strand | Antisense | |||||||
SAGE:cactctttcaactcgct | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:atagtcttcgtcgctgc | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:tatatgatcacttcagc | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:atagtcttcg | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
WBProcess | WBbiopr:00000039 | ||||||||
Map_info | Map | IV | Position | 8.50566 | Error | 0.003333 | |||
Positive | Positive_clone | JC8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 5467 | |||||||
Pseudo_map_position | |||||||||
Reference (11) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |