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WormBase Tree Display for Gene: WBGene00010268

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Name Class

WBGene00010268SMapS_parentSequenceF58G1
IdentityVersion2
NameCGC_namearrd-10Person_evidenceWBPerson261
WBPerson522
Sequence_nameF58G1.6
Molecular_nameF58G1.6
F58G1.6.1
CE53792
Other_nameCELE_F58G1.6Accession_evidenceNDBBX284602
Public_namearrd-10
DB_infoDatabaseAceViewgene2N233
WormQTLgeneWBGene00010268
WormFluxgeneWBGene00010268
NDBlocus_tagCELE_F58G1.6
PanthergeneCAEEL|WormBase=WBGene00010268|UniProtKB=O62274
familyPTHR11188
NCBIgene174936
RefSeqproteinNM_001377887.1
TrEMBLUniProtAccO62274
UniProt_GCRPUniProtAccO62274
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:51WBPerson1971EventImportedInitial conversion from CDS class of WS125
219 Jul 2010 16:45:41WBPerson2970Name_changeCGC_namearrd-10
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classarrd
Allele (101)
StrainWBStrain00051461
RNASeq_FPKM (74)
GO_annotation00037582
00037583
Ortholog (23)
Paralog (29)
Structured_descriptionAutomated_descriptionPredicted to be involved in protein transport. Predicted to be located in cytoplasm.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF58G1.6
Corresponding_CDS_historyF58G1.6:wp109
F58G1.6:wp274
Corresponding_transcriptF58G1.6.1
Other_sequenceJI483290.1
Dviv_isotig28165
Oden_isotig24808
Name_isotig03940
Associated_featureWBsf658319
WBsf658320
WBsf990259
WBsf990260
WBsf990261
WBsf990262
WBsf990263
WBsf1013528
WBsf222311
WBsf222312
Experimental_infoRNAi_resultWBRNAi00049038Inferred_automaticallyRNAi_primary
WBRNAi00016004Inferred_automaticallyRNAi_primary
WBRNAi00033125Inferred_automaticallyRNAi_primary
Expr_patternExpr1016330
Expr1034479
Expr1152780
Expr2009409
Expr2027645
Microarray_results (20)
Expression_clusterWBPaper00031040:TGF-beta_adult_upregulated
WBPaper00037950:germline-precursors_embryo_enriched
WBPaper00037950:germline-precursors_embryo_SelectivelyEnriched
WBPaper00037950:hypodermis_embryo_enriched
WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00040221:DAF-12_target_ALF4
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00044246:pgrn-1_ced-1_downregulated
WBPaper00044736:oscillating_dev_expression
WBPaper00045774:clk-1_downregulated
WBPaper00045934:wrn-1(gk99)_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
WBPaper00047131:daf-2(e1370)_upregulated_N2-background
WBPaper00048988:neuron_expressed
WBPaper00049498:npr-1(ur89)_regulated_3
WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
WBPaper00050193:cec-4(ok3124)_downregulated_L1
WBPaper00050193:met-2(n4256)set-25(n5021)_downregulated_L1
WBPaper00050370:dpy-21(e428)_L3_downregulated
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00051311:VGLN-1-interacting
WBPaper00051558:aging_regulated
WBPaper00053295:lin-22(ot269)_upregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053388:dauer_regulated_Cluster6
WBPaper00053771:up_at_dpy-7(e88)
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055226:ADR-2_target_adr-1(tm668)
WBPaper00055226:ADR-2_target_N2
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rapamycin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055354:Rifampicin-Psora_downregulated
WBPaper00055482:Tunicamycin_downregulated
WBPaper00055827:pfd-6(gk493446)_downregulated
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056290:mdt-15(mg584)_upregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056826:SGP_biased
WBPaper00057041:unc-70(cas983)_upregulated
WBPaper00057265:metaformin_downregulated_OP50
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058958:100mGy-irradiation-72h_upregulated
WBPaper00058969:RIS_depleted
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059605:mut-16(pk710)_upregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059728:5ug_cholesterol_upregulated
WBPaper00059728:20ug_cholesterol_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060459:bcat-1(RNAi)_upregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:AMso
WBPaper00061439:unc-30(ok613)_upregulated
WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00061527:lon-8-C18D11.1_11630
WBPaper00061651:AFD_enriched
WBPaper00062156:jmjd-5(zr1234)_upregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062184:PA14_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062440:crh-1(n3315)_upregulated
WBPaper00062440:crh-1(syb385)_upregulated
WBPaper00062590:Aging_downregulated_hypodermis
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064403:Heat-killed-E.Coli_upregulated
WBPaper00064721:fasn-1(g14)_downregulated_starved
WBPaper00064769:him-17(me24)_upregulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065835:Day5_vs_Day1_downregulated
WBPaper00065835:Day11_vs_Day1_downregulated
WBPaper00065841:21_0
WBPaper00065841:21_1
WBPaper00065841:139_0
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066110:Cisplatin_upregulated_diploid
WBPaper00066110:Doxorubicin_upregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00030985:Photorhabdus_luminescens_downregulated
WBPaper00032948:FedUp
WBPaper00034739:N2moreDR1350
WBPaper00036286:Pattern_C
WBPaper00038172:crh-1null_down_regulated
WBPaper00038427:lin-54_embryo_changed
WBPaper00040876:mir-35_downregulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00045673:colistin_upregulated
WBPaper00047070:N2_starvation_downregulated
WBPaper00047070:N2_UV_downregulated
WBPaper00047070:xpa-1_UV_downregulated
WBPaper00048989:N2_rapamycin_upregulated
WBPaper00053236:Starvation_regulated_N2
Interaction (14)
Map_infoMapIIPosition12.5146Error0.003887
PositivePositive_cloneF58G1Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene