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WormBase Tree Display for Gene: WBGene00010139

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Name Class

WBGene00010139SMapS_parentSequenceF56A8
IdentityVersion1
NameSequence_nameF56A8.3
Molecular_nameF56A8.3a
F56A8.3a.1
CE28340
F56A8.3b
CE16123
F56A8.3a.2
F56A8.3b.1
F56A8.3b.2
F56A8.3b.3
Other_nameCELE_F56A8.3Accession_evidenceNDBBX284603
Public_nameF56A8.3
DB_infoDatabaseAceViewgene3O351
WormQTLgeneWBGene00010139
WormFluxgeneWBGene00010139
NDBlocus_tagCELE_F56A8.3
PanthergeneCAEEL|WormBase=WBGene00010139|UniProtKB=Q95ZS5
familyPTHR16083
NCBIgene176740
RefSeqproteinNM_067330.6
NM_001379979.2
TREEFAMTREEFAM_IDTF316929
TrEMBLUniProtAccQ95ZS5
O45574
UniProt_GCRPUniProtAccQ95ZS5
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:51WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (101)
RNASeq_FPKM (74)
GO_annotation00034792
Contained_in_operonCEOP3772
Ortholog (21)
Structured_descriptionAutomated_descriptionPredicted to be located in membrane. Expressed in intestine; neurons; pharynx; and rectal gland cell. Is an ortholog of human LRRC59 (leucine rich repeat containing 59).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF56A8.3a
F56A8.3b
Corresponding_transcriptF56A8.3a.1
F56A8.3a.2
F56A8.3b.1
F56A8.3b.2
F56A8.3b.3
Other_sequence (14)
Associated_feature (15)
Experimental_infoRNAi_result (13)
Expr_patternExpr11289
Expr12326
Expr12327
Expr1021840
Expr1034430
Expr1152388
Expr2004266
Expr2022488
Drives_constructWBCnstr00018739
WBCnstr00020997
WBCnstr00031636
Construct_productWBCnstr00031636
AntibodyWBAntibody00002625
Microarray_results (44)
Expression_clusterWBPaper00032528:L3_enriched
WBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038118:stress_upregulated_N2
WBPaper00038289:oocyte_protein
WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
WBPaper00040209:B.thuringiensis_upregulated_MY15
WBPaper00040221:DAF-12_target_ALF4
WBPaper00041071:spe-44_upregulated
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044736:flat_dev_expression
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045521:Gender_Neutral
WBPaper00045774:clk-1_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00048923:Aging_regulated
WBPaper00048971:daf-16(mgDf50)_downregulated_L1
WBPaper00048988:neuron_expressed
WBPaper00049498:npr-1(ur89)_regulated_3
WBPaper00049545:cco-1(RNAi)_upregulated
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050234:lin-28(RNAi)_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:seam_expressed
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051558:aging_regulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053289:DREAM-target
WBPaper00053302:zidovudine_24h_regulated
WBPaper00053388:dauer_regulated_Cluster5
WBPaper00053599:oocyte_vs_mitosis_downregulated
WBPaper00053615:SMO-1_target
WBPaper00053810:isp-1(qm150)_downregulated
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056275:P.aeruginosa_downregulated
WBPaper00056275:P.aeruginosa_downregulated_pmk-1(km25)_dependent
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00056809:smn-1(ok355)_downregulated
WBPaper00056826:SGP_biased
WBPaper00057041:spc-1(cas971)_upregulated
WBPaper00057041:unc-70(cas983)_upregulated
WBPaper00057288:Cold_downregulated_transcript
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00059174:MEG-3_interacting
WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059471:EGL-43_interacting
WBPaper00060084:cco-1(RNAi)_downregulated_N2
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061340:AVH_parent
WBPaper00061340:Neuroblast_ALA_RMED
WBPaper00061340:Neuroblast_AVG_RIR
WBPaper00061340:Neuroblast_AWC_SAAVx
WBPaper00061341:28C_24h_downregulated
WBPaper00061439:unc-30(ok613)_upregulated
WBPaper00061527:dld-1-skn-1_16701
WBPaper00061527:npp-8_4368-E01B7.1_7741
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062354:H.zoospora_6h_regulated
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064071:NHR-49_interacting
WBPaper00065120:body-muscle-transcriptome
WBPaper00065373:Cisplatin_upregulated_WT
cgc4489_group_8
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00031003:24hr_muscle_enriched
WBPaper00031003:total_muscle_enriched
WBPaper00031252:AIN-1_IP_enriched
WBPaper00031252:AIN-2_IP_enriched
WBPaper00031832:slr-2_regulated
WBPaper00032948:FedUp
WBPaper00036123:Atrazine_regulated
WBPaper00036123:Cadmium_regulated
WBPaper00038172:tax-6null_down_regulated
WBPaper00040184:hcf-1down_sir-2.1down_daf-2down
WBPaper00040426:CYD-1_CDK-4_downregulated
WBPaper00041174:environmental
WBPaper00041174:environmental_prime
WBPaper00041207:CE_dauer_down
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00042331:a-SWCNTs_downregulated
WBPaper00047070:N2_starvation_downregulated
WBPaper00048989:eat-2(ad465)_upregulated_in-DMSO
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
Interaction (104)
Map_infoPositivePositive_cloneF56A8Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIII21.152
ReferenceWBPaper00038491
WBPaper00046695
WBPaper00055090
MethodGene