WormBase Tree Display for Gene: WBGene00010115
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| WBGene00010115 | SMap | S_parent | Sequence | F55F3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | aakb-1 | Person_evidence | WBPerson2105 | |||||
| WBPerson542 | |||||||||
| Sequence_name | F55F3.1 | ||||||||
| Molecular_name | F55F3.1 | ||||||||
| F55F3.1.1 | |||||||||
| CE18744 | |||||||||
| F55F3.1.2 | |||||||||
| Other_name | CELE_F55F3.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | aakb-1 | ||||||||
| DB_info | Database | AceView | gene | XO377 | |||||
| WormQTL | gene | WBGene00010115 | |||||||
| WormFlux | gene | WBGene00010115 | |||||||
| NDB | locus_tag | CELE_F55F3.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00010115|UniProtKB=Q9XUY2 | |||||||
| family | PTHR10343 | ||||||||
| NCBI | gene | 181492 | |||||||
| RefSeq | protein | NM_001381137.2 | |||||||
| TREEFAM | TREEFAM_ID | TF313827 | |||||||
| TrEMBL | UniProtAcc | Q9XUY2 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XUY2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 02 Feb 2006 09:28:57 | WBPerson2970 | Name_change | CGC_name | aakb-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | aakb | ||||||||
| Allele (60) | |||||||||
| Strain | WBStrain00001899 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00102195 | ||||||||
| 00102196 | |||||||||
| 00102197 | |||||||||
| 00102198 | |||||||||
| 00102199 | |||||||||
| 00102200 | |||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00012928 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00007222 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00018522 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | aakb-1 encodes one of two C. elegans AMP kinase (AMPK) beta regulatory subunits. | Paper_evidence | WBPaper00031352 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 14 Oct 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable protein kinase binding activity. Predicted to be involved in signal transduction. Predicted to be located in cytoplasm and nucleus. Predicted to be part of nucleotide-activated protein kinase complex. Expressed in body wall musculature; neurons; non-striated muscle; rectal valve cell; and tail hypodermis. Is an ortholog of human PRKAB1 (protein kinase AMP-activated non-catalytic subunit beta 1) and PRKAB2 (protein kinase AMP-activated non-catalytic subunit beta 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F55F3.1 | |||||||
| Corresponding_transcript | F55F3.1.1 | ||||||||
| F55F3.1.2 | |||||||||
| Other_sequence (58) | |||||||||
| Associated_feature | WBsf655224 | ||||||||
| WBsf655225 | |||||||||
| WBsf717395 | |||||||||
| WBsf718759 | |||||||||
| WBsf1007718 | |||||||||
| WBsf1007719 | |||||||||
| WBsf1007720 | |||||||||
| WBsf1024292 | |||||||||
| WBsf236610 | |||||||||
| WBsf236611 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00048519 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00102976 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00102996 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032883 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00102986 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015739 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr6205 | ||||||||
| Expr6206 | |||||||||
| Expr11584 | |||||||||
| Expr1017539 | |||||||||
| Expr1034422 | |||||||||
| Expr1152306 | |||||||||
| Expr2009054 | |||||||||
| Expr2027290 | |||||||||
| Drives_construct | WBCnstr00002690 | ||||||||
| WBCnstr00004393 | |||||||||
| WBCnstr00031657 | |||||||||
| Construct_product | WBCnstr00031657 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (133) | |||||||||
| Interaction (60) | |||||||||
| Map_info | Map | X | Position | 14.7538 | Error | 0.044339 | |||
| Positive | Positive_clone | F55F3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027616 | ||||||||
| WBPaper00030887 | |||||||||
| WBPaper00032396 | |||||||||
| WBPaper00033342 | |||||||||
| WBPaper00033884 | |||||||||
| WBPaper00035902 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00039083 | |||||||||
| WBPaper00040247 | |||||||||
| WBPaper00044832 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064229 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
