WormBase Tree Display for Gene: WBGene00009968
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| WBGene00009968 | SMap | S_parent | Sequence | CHROMOSOME_V | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | fig-1 | Person_evidence | WBPerson3410 | |||||
| WBPerson3085 | |||||||||
| WBPerson576 | |||||||||
| Sequence_name | F53B7.5 | ||||||||
| Molecular_name | F53B7.5a | ||||||||
| F53B7.5a.1 | |||||||||
| CE47474 | |||||||||
| F53B7.5b | |||||||||
| CE53054 | |||||||||
| F53B7.5b.1 | |||||||||
| Other_name | CELE_F53B7.5 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | fig-1 | ||||||||
| DB_info | Database | AceView | gene | 5L452 | |||||
| WormQTL | gene | WBGene00009968 | |||||||
| WormFlux | gene | WBGene00009968 | |||||||
| NDB | locus_tag | CELE_F53B7.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009968|UniProtKB=G5EGB4 | |||||||
| family | PTHR31507 | ||||||||
| NCBI | gene | 179523 | |||||||
| RefSeq | protein | NM_001129475.3 | |||||||
| NM_001129474.4 | |||||||||
| TREEFAM | TREEFAM_ID | TF315483 | |||||||
| TrEMBL | UniProtAcc | G5EGB4 | |||||||
| H9G2W3 | |||||||||
| UniProt_GCRP | UniProtAcc | G5EGB4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 10 Sep 2008 16:37:04 | WBPerson2970 | Name_change | CGC_name | fig-1 | ||||
| 3 | 09 Jan 2012 12:38:37 | WBPerson4025 | Event | Split_into | WBGene00219325 | ||||
| Split_into | WBGene00219325 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fig | ||||||||
| Allele (157) | |||||||||
| Possibly_affected_by | WBVar02157904 | ||||||||
| Strain | WBStrain00052693 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00019912 | ||||||||
| Ortholog (32) | |||||||||
| Paralog (18) | |||||||||
| Structured_description | Concise_description | fig-1 encodes a predicted extracellular protein containing conserved thrombospondin TSP1 domains; FIG-1 function is required cell nonautonomously for sensory organ function as measured by dye filling and behavioral assays; a fig-1::GFP promoter fusion is expressed in amphid and phasmid sheath glial cells from late embryogenesis through adulthood; as fig-1(RNAi) can produce defects at all stages of development and fig-1 mRNA is highly expressed, FIG-1 is likely to be a labile protein that plays a nonstructural role in regulating neuronal function. | Paper_evidence | WBPaper00032317 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 08 Dec 2009 00:00:00 | ||||||||
| Automated_description | Predicted to be located in membrane. Expressed in amphid sheath cell and phasmid sheath cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F53B7.5a | |||||||
| F53B7.5b | |||||||||
| Corresponding_CDS_history | F53B7.5:wp173 | ||||||||
| F53B7.5a:wp230 | |||||||||
| F53B7.5b:wp270 | |||||||||
| Corresponding_transcript | F53B7.5a.1 | ||||||||
| F53B7.5b.1 | |||||||||
| Other_sequence | ACC12564_1 | ||||||||
| SS03471 | |||||||||
| Oden_isotig17409 | |||||||||
| Acan_isotig04140 | |||||||||
| EX536206.1 | |||||||||
| Associated_feature | WBsf668676 | ||||||||
| WBsf669348 | |||||||||
| WBsf1001240 | |||||||||
| WBsf1001241 | |||||||||
| WBsf1020387 | |||||||||
| WBsf234477 | |||||||||
| WBsf234478 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00091964 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00048098 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015486 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12749 | ||||||||
| Expr1016241 | |||||||||
| Expr1034342 | |||||||||
| Expr1151908 | |||||||||
| Expr2011759 | |||||||||
| Expr2029997 | |||||||||
| Drives_construct | WBCnstr00005414 | ||||||||
| WBCnstr00007446 | |||||||||
| WBCnstr00007447 | |||||||||
| WBCnstr00019970 | |||||||||
| WBCnstr00021144 | |||||||||
| WBCnstr00031777 | |||||||||
| WBCnstr00038088 | |||||||||
| Construct_product | WBCnstr00005414 | ||||||||
| WBCnstr00007446 | |||||||||
| WBCnstr00007447 | |||||||||
| WBCnstr00007448 | |||||||||
| WBCnstr00031777 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (116) | |||||||||
| Interaction | WBInteraction000536407 | ||||||||
| Map_info | Map | V | Position | 2.87711 | Error | 0.003354 | |||
| Positive | Positive_clone | F53B7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031789 | ||||||||
| WBPaper00032317 | |||||||||
| WBPaper00032771 | |||||||||
| WBPaper00039427 | |||||||||
| WBPaper00039849 | |||||||||
| WBPaper00048088 | |||||||||
| WBPaper00049809 | |||||||||
| WBPaper00052744 | |||||||||
| WBPaper00062520 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
