WormBase Tree Display for Gene: WBGene00009887

WBGene00009887 SMap: S_parent: Sequence: F49E2
  Identity: Version: 2
    Name: CGC_name: glb-17 Paper_evidence: WBPaper00031066
          Person_evidence: WBPerson1540
      Sequence_name: F49E2.4
      Molecular_name: F49E2.4a
        F49E2.4a.1
        CE01012
        F49E2.4b
        CE44201
        F49E2.4a.2
        F49E2.4b.1
        F49E2.4b.2
      Other_name: CELE_F49E2.4 Accession_evidence: NDB BX284606
      Public_name: glb-17
    DB_info: Database: AceView gene XK192
        WormQTL gene WBGene00009887
        WormFlux gene WBGene00009887
        NDB locus_tag CELE_F49E2.4
        NCBI gene 186039
        RefSeq protein NM_001270149.4
            NM_001270150.3
        TREEFAM TREEFAM_ID TF321698
        TrEMBL UniProtAcc D0VWM4
            Q20623
        UniProt_GCRP UniProtAcc D0VWM4
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 22 Oct 2007 15:16:42 WBPerson2970 Name_change: CGC_name: glb-17
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: glb
    Allele: WBVar01825256
      WBVar01551138
      WBVar01551139
      WBVar01551140
      WBVar01551141
      WBVar01619777
      WBVar01619778
      WBVar01619779
      WBVar01619780
      WBVar01619781
      WBVar01500130
      WBVar01500131
      WBVar00257519
      WBVar01499963
      WBVar00513198
      WBVar01570941
      WBVar00513199
      WBVar00513200
      WBVar00513201
      WBVar00513202
      WBVar00513203
      WBVar00513204
      WBVar00513205
      WBVar02139880
      WBVar01602108
      WBVar01175093
      WBVar01816667
      WBVar01175094
      WBVar01816668
      WBVar01175095
      WBVar01816669
      WBVar01175096
      WBVar01175097
      WBVar01175098
      WBVar02065690
      WBVar01175099
      WBVar02065691
      WBVar01175100
      WBVar01175101
      WBVar01175102
      WBVar01175103
      WBVar01175104
      WBVar01175105
      WBVar01175106
      WBVar01175107
      WBVar01175108
      WBVar01175109
      WBVar01887641
      WBVar01499642
      WBVar01887642
      WBVar01175110
      WBVar01887643
      WBVar01897701
      WBVar00258148
      WBVar01987490
      WBVar01498960
      WBVar01500067
    RNASeq_FPKM (74)
    GO_annotation: 00117448
      00117449
    Ortholog (26)
    Paralog: WBGene00011296 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00007741 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00008996 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00077763 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: glb-17 encodes a globin with no obvious function in mass RNAi assays. Paper_evidence: WBPaper00025067
            WBPaper00031066
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Dec 2007 00:00:00
      Automated_description: Predicted to enable heme binding activity and oxygen binding activity. Expressed in head neurons; lateral nerve cord; tail neurons; ventral cord neurons; and ventral nerve cord. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F49E2.4a
      F49E2.4b
    Corresponding_transcript: F49E2.4a.1
      F49E2.4a.2
      F49E2.4b.1
      F49E2.4b.2
    Other_sequence: NBC05011_1
      Acan_isotig12975
      Tcir_isotig24085
      Tcir_isotig32162
      NB10020
      Dviv_isotig24816
      Tcir_isotig27030
    Associated_feature: WBsf1006477
      WBsf1023592
      WBsf237778
      WBsf237779
  Experimental_info: RNAi_result: WBRNAi00032546 Inferred_automatically: RNAi_primary
      WBRNAi00047863 Inferred_automatically: RNAi_primary
      WBRNAi00015328 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr8497
      Expr1019823
      Expr1151694
      Expr2012052
      Expr2030288
    Drives_construct: WBCnstr00013326
      WBCnstr00031842
    Construct_product: WBCnstr00031842
    Microarray_results (20)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_upregulated
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_larva_enriched
      WBPaper00037950:all-neurons_larva_SelectivelyEnriched
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00044736:flat_dev_expression
      WBPaper00045316:prg-1_upregulated_L3
      WBPaper00046012:tdp-1(ok803)_upregulated
      WBPaper00048988:neuron_enriched
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050344:ASER-neuron_enriched
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:mir-34(OverExpression)_vs_N2_regulated_adult_20C
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_downregulated
      WBPaper00053606:N2_vs_elt-2(ca15)_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Psora_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rapamycin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055354:Rifampicin_downregulated
      WBPaper00056293:rpl-5(0)-rpl-33(0)_upregulated
      WBPaper00057068:ints-4(RNAi)_downregulated
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058711:paraquat_downregulated
      WBPaper00058711:wdr-5(ok1417)_downregulated
      WBPaper00058725:sftb-1(cer39)_upregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061340:AUA
      WBPaper00061340:PVP
      WBPaper00061340:PVT
      WBPaper00061340:URX
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061527:mtd-1-mec-18
      WBPaper00061651:AUA_enriched
      WBPaper00061651:AVG_enriched
      WBPaper00061651:PVN_enriched
      WBPaper00061651:PVP_enriched
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00061995:mter-4(syb3662syb3403)_downregulated
      WBPaper00062103:neuron_enriched
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064939:vit-5(RNAi)_upregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065623:155
      WBPaper00065749:Heat-Shock_downregulated_endu-2(tm4977)
      WBPaper00065841:7_1
      WBPaper00065841:7_2
      WBPaper00065841:39_2
      WBPaper00065841:50_0
      WBPaper00065841:80_0
      WBPaper00065841:90_0
      WBPaper00065841:131_0
      WBPaper00065841:140_0
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066232:ash-2(RNAi)_downregulated_WT
      cgc4489_group_21
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00030839:Embryo_Pan_Neuronal
      WBPaper00030839:Larval_Pan_Neuronal
      WBPaper00030985:Erwinia_carotovora_upregulated
      WBPaper00032948:StarveUp2
      WBPaper00035227:heat_shock_regulated
      WBPaper00035588:alg-1(-)_upregulated
      WBPaper00036123:Atrazine_regulated
      WBPaper00036286:Pattern_I
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00040876:mir-35_downregulated
      WBPaper00047070:N2_starvation_upregulated
    Interaction: WBInteraction000032147
      WBInteraction000179968
      WBInteraction000200262
      WBInteraction000245136
      WBInteraction000327744
  Map_info: Map: X Position: 1.42181
    Positive: Positive_clone: F49E2 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00031066
    WBPaper00032254
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene