WormBase Tree Display for Gene: WBGene00009681
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| WBGene00009681 | SMap | S_parent | Sequence | F44D12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | gipc-2 | Person_evidence | WBPerson260 | |||||
| Sequence_name | F44D12.4 | ||||||||
| Molecular_name | F44D12.4 | ||||||||
| F44D12.4.1 | |||||||||
| CE32187 | |||||||||
| Other_name | CELE_F44D12.4 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | gipc-2 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 07 Feb 2012 16:30:56 | WBPerson2970 | Name_change | CGC_name | gipc-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gipc | ||||||||
| Allele (20) | |||||||||
| Strain | WBStrain00031849 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (49) | |||||||||
| Paralog | WBGene00016440 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Expressed in spermatid. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 15 and oculopharyngodistal myopathy 2. Human GIPC1 enables signaling receptor binding activity. Is predicted to encode a protein with the following domains: PDZ domain-containing protein GIPC1/2/3; PDZ superfamily; and PDZ domain. Is an ortholog of human GIPC1 (GIPC PDZ domain containing family member 1) and GIPC3 (GIPC PDZ domain containing family member 3). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110470 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18183) | ||||
| DOID:0081298 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1226) | ||||||
| Molecular_info | Corresponding_CDS | F44D12.4 | |||||||
| Corresponding_CDS_history | F44D12.4:wp88 | ||||||||
| Corresponding_transcript | F44D12.4.1 | ||||||||
| Other_sequence (19) | |||||||||
| Associated_feature | WBsf230653 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00022537 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00000250 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032237 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014927 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047277 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram206 | ||||||||
| Expr6070 | |||||||||
| Expr15152 | |||||||||
| Expr1151133 | |||||||||
| Expr2012041 | |||||||||
| Expr2030277 | |||||||||
| Drives_construct | WBCnstr00002725 | ||||||||
| WBCnstr00031997 | |||||||||
| Construct_product | WBCnstr00031997 | ||||||||
| Antibody | WBAntibody00002867 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (278) | |||||||||
| Interaction (229) | |||||||||
| Map_info | Map | IV | Position | 4.46701 | |||||
| Positive | Positive_clone | F44D12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056589 | |||||||||
| WBPaper00060732 | |||||||||
| WBPaper00062388 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
