WormBase Tree Display for Gene: WBGene00009542
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| WBGene00009542 | SMap | S_parent | Sequence | F38E11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | copb-2 | Person_evidence | WBPerson3188 | |||||
| Sequence_name | F38E11.5 | ||||||||
| Molecular_name | F38E11.5 | ||||||||
| F38E11.5.1 | |||||||||
| CE18673 | |||||||||
| Other_name | CELE_F38E11.5 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | copb-2 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 08 Aug 2013 16:41:57 | WBPerson2970 | Name_change | CGC_name | copb-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | copb | ||||||||
| Allele (60) | |||||||||
| Strain | WBStrain00051353 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (21) | |||||||||
| Ortholog (40) | |||||||||
| Paralog | WBGene00008476 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WormBase-Compara | |||||||||
| WBGene00022119 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00270321 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | F38E11.5 encodes a beta' (beta-prime) subunit of the coatomer (COPI) complex; in mass RNAi assays, F38E11.5 is required for fertility and general health. | Paper_evidence | WBPaper00005654 | |||||
| WBPaper00006395 | |||||||||
| WBPaper00012764 | |||||||||
| WBPaper00012858 | |||||||||
| WBPaper00012863 | |||||||||
| WBPaper00012889 | |||||||||
| WBPaper00013106 | |||||||||
| WBPaper00013627 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable structural molecule activity. Involved in embryo development; intracellular protein transport; and oocyte development. Predicted to be located in COPI-coated vesicle membrane and Golgi membrane. Predicted to be part of COPI vesicle coat. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly 19. Is an ortholog of human COPB2 (COPI coat complex subunit beta 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0070281 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2232) | ||||
| Molecular_info | Corresponding_CDS | F38E11.5 | |||||||
| Corresponding_transcript | F38E11.5.1 | ||||||||
| Other_sequence (42) | |||||||||
| Associated_feature | WBsf646235 | ||||||||
| WBsf660509 | |||||||||
| WBsf997425 | |||||||||
| WBsf1017967 | |||||||||
| WBsf228831 | |||||||||
| WBsf228832 | |||||||||
| WBsf228833 | |||||||||
| WBsf228834 | |||||||||
| Experimental_info | RNAi_result (15) | ||||||||
| Expr_pattern | Expr1024749 | ||||||||
| Expr1034170 | |||||||||
| Expr1150600 | |||||||||
| Expr2010457 | |||||||||
| Expr2028697 | |||||||||
| Drives_construct | WBCnstr00032114 | ||||||||
| Construct_product | WBCnstr00032114 | ||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (119) | |||||||||
| Interaction (107) | |||||||||
| Map_info | Map | IV | Position | 4.27042 | |||||
| Positive | Positive_clone | F38E11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003831 | ||||||||
| WBPaper00018551 | |||||||||
| WBPaper00027057 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
