WormBase Tree Display for Gene: WBGene00009535
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| WBGene00009535 | SMap | S_parent | Sequence | F38C2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | F38C2.1 | |||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_F38C2.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | F38C2.1 | ||||||||
| DB_info | Database | AceView | gene | 4R7 | |||||
| WormQTL | gene | WBGene00009535 | |||||||
| WormFlux | gene | WBGene00009535 | |||||||
| NDB | locus_tag | CELE_F38C2.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009535|UniProtKB=A0A078BPK1 | |||||||
| family | PTHR31664 | ||||||||
| NCBI | gene | 185459 | |||||||
| RefSeq | protein | NM_001307176.1 | |||||||
| NM_001307174.1 | |||||||||
| NM_070526.1 | |||||||||
| NM_001307175.1 | |||||||||
| TrEMBL | UniProtAcc | A0A078BQL6 | |||||||
| A0A078BPI4 | |||||||||
| A0A078BPK1 | |||||||||
| O45488 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A078BPK1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (119) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00016535 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00013647 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00011374 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00010413 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00019818 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00044514 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00015424 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WBGene00017297 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Enriched in NSM based on tiling array studies. Is affected by several genes including csr-1; pqm-1; and dop-1 based on RNA-seq and microarray studies. Is affected by twelve chemicals including indole; Psoralens; and allantoin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Domain of unknown function (DUF4440); NTF2-like domain superfamily; and Domain of unknown function DUF4440. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F38C2.1a | |||||||
| F38C2.1b | |||||||||
| F38C2.1c | |||||||||
| F38C2.1d | |||||||||
| Corresponding_transcript | F38C2.1a.1 | ||||||||
| F38C2.1b.1 | |||||||||
| F38C2.1c.1 | |||||||||
| F38C2.1d.1 | |||||||||
| Other_sequence | PTC03692_1 | ||||||||
| PT03966 | |||||||||
| Associated_feature | WBsf998836 | ||||||||
| WBsf998837 | |||||||||
| WBsf1018846 | |||||||||
| WBsf1018847 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00031957 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00046699 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014553 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1023319 | ||||||||
| Expr1150580 | |||||||||
| Drives_construct | WBCnstr00032120 | ||||||||
| Construct_product | WBCnstr00032120 | ||||||||
| Microarray_results (13) | |||||||||
| Expression_cluster (57) | |||||||||
| Interaction | WBInteraction000139541 | ||||||||
| WBInteraction000211712 | |||||||||
| WBInteraction000267383 | |||||||||
| WBInteraction000272555 | |||||||||
| WBInteraction000272832 | |||||||||
| WBInteraction000411150 | |||||||||
| WBInteraction000441190 | |||||||||
| WBInteraction000457303 | |||||||||
| Map_info | Positive | Positive_clone | F38C2 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | IV | 14.6184 | |||||||
| Method | Gene |
