WormBase Tree Display for Gene: WBGene00009429
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| WBGene00009429 | SMap | S_parent | Sequence | F35E12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | irg-5 | Person_evidence | WBPerson9709 | |||||
| Sequence_name | F35E12.5 | ||||||||
| Molecular_name | F35E12.5 | ||||||||
| F35E12.5.1 | |||||||||
| CE38510 | |||||||||
| Other_name | CELE_F35E12.5 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | irg-5 | ||||||||
| DB_info | Database | AceView | gene | 5O218 | |||||
| WormQTL | gene | WBGene00009429 | |||||||
| WormFlux | gene | WBGene00009429 | |||||||
| NDB | locus_tag | CELE_F35E12.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009429|UniProtKB=O02357 | |||||||
| family | PTHR21447 | ||||||||
| NCBI | gene | 185307 | |||||||
| RefSeq | protein | NM_001380807.2 | |||||||
| TREEFAM | TREEFAM_ID | TF316592 | |||||||
| TrEMBL | UniProtAcc | O02357 | |||||||
| UniProt_GCRP | UniProtAcc | O02357 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 28 Sep 2016 15:57:39 | WBPerson2970 | Name_change | CGC_name | irg-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | irg | ||||||||
| Allele (24) | |||||||||
| Strain | WBStrain00033153 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00027140 | ||||||||
| 00027141 | |||||||||
| Contained_in_operon | CEOP5575 | ||||||||
| Ortholog (48) | |||||||||
| Paralog (17) | |||||||||
| Structured_description | Automated_description | Involved in defense response to Gram-positive bacterium. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F35E12.5 | |||||||
| Corresponding_transcript | F35E12.5.1 | ||||||||
| Associated_feature | WBsf718448 | ||||||||
| WBsf1001883 | |||||||||
| WBsf1020761 | |||||||||
| WBsf234856 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00014332 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00082471 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00046337 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00082614 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00078256 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr15756 | ||||||||
| Expr1012889 | |||||||||
| Expr1150225 | |||||||||
| Expr2012820 | |||||||||
| Drives_construct | WBCnstr00005986 | ||||||||
| WBCnstr00017593 | |||||||||
| WBCnstr00032194 | |||||||||
| Construct_product | WBCnstr00032194 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (405) | |||||||||
| Interaction | WBInteraction000188239 | ||||||||
| WBInteraction000318532 | |||||||||
| WBInteraction000386081 | |||||||||
| WBInteraction000425080 | |||||||||
| WBInteraction000518581 | |||||||||
| WBInteraction000518634 | |||||||||
| WBInteraction000520006 | |||||||||
| WBInteraction000524406 | |||||||||
| WBInteraction000535126 | |||||||||
| WBInteraction000535127 | |||||||||
| WBInteraction000535128 | |||||||||
| WBInteraction000535129 | |||||||||
| WBInteraction000535130 | |||||||||
| WBInteraction000535131 | |||||||||
| WBInteraction000535132 | |||||||||
| WBInteraction000535133 | |||||||||
| WBInteraction000535134 | |||||||||
| WBInteraction000535135 | |||||||||
| WBInteraction000535136 | |||||||||
| WBInteraction000535137 | |||||||||
| WBInteraction000535138 | |||||||||
| WBInteraction000535139 | |||||||||
| WBInteraction000535140 | |||||||||
| WBInteraction000535141 | |||||||||
| WBInteraction000535142 | |||||||||
| WBInteraction000535143 | |||||||||
| WBInteraction000535144 | |||||||||
| WBInteraction000535145 | |||||||||
| WBInteraction000535146 | |||||||||
| WBInteraction000535147 | |||||||||
| WBInteraction000535148 | |||||||||
| WBInteraction000535149 | |||||||||
| WBInteraction000535150 | |||||||||
| WBInteraction000537380 | |||||||||
| WBInteraction000537381 | |||||||||
| WBInteraction000541057 | |||||||||
| WBInteraction000544065 | |||||||||
| WBInteraction000544066 | |||||||||
| WBInteraction000544067 | |||||||||
| WBInteraction000544078 | |||||||||
| WBInteraction000549820 | |||||||||
| WBInteraction000549938 | |||||||||
| WBInteraction000577882 | |||||||||
| Map_info | Map | V | Position | 5.58641 | |||||
| Positive | Positive_clone | F35E12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (16) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
