WormBase Tree Display for Gene: WBGene00009203

WBGene00009203 SMap: S_parent: Sequence: F28C6
  Identity: Version: 2
    Name: CGC_name: aptf-3 Person_evidence: WBPerson3268
      Sequence_name: F28C6.2
      Molecular_name: F28C6.2
        F28C6.2.1
        CE03273
      Other_name: CELE_F28C6.2 Accession_evidence: NDB BX284602
      Public_name: aptf-3
    DB_info: Database: AceView gene 2I883
        WormQTL gene WBGene00009203
        WormFlux gene WBGene00009203
        NDB locus_tag CELE_F28C6.2
        Panther gene CAEEL|WormBase=WBGene00009203|UniProtKB=Q19862
          family PTHR10812
        NCBI gene 185047
        RefSeq protein NM_063418.3
        TREEFAM TREEFAM_ID TF313718
        TrEMBL UniProtAcc Q19862
        UniProt_GCRP UniProtAcc Q19862
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:49 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 02 Sep 2013 16:45:43 WBPerson2970 Name_change: CGC_name: aptf-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: aptf
    Allele (28)
    RNASeq_FPKM (74)
    GO_annotation (15)
    Ortholog (32)
    Paralog: WBGene00009202 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00019424 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00014975 Caenorhabditis elegans From_analysis: modENCODE_Pseudogenes
      WBGene00013383 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Concise_description: aptf-3 encodes one of four C. elegans AP-2-like transcription factors; APTF-3 is ~60% identical to that of APTF-4, which lies adjacent to aptf-3 on chromosome II; loss of aptf-3 activity via large-scale RNAi results in some embryonic lethality and low levels of larval arrest, body morphology defects, and uncoordinated locomotion. Paper_evidence: WBPaper00005599
          Curator_confirmed: WBPerson1843
          Date_last_updated: 03 Jul 2007 00:00:00
      Automated_description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II and regulation of cell population proliferation. Predicted to be located in nucleus. Expressed in head neurons and intestine. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F28C6.2
    Corresponding_transcript: F28C6.2.1
    Other_sequence: CRC08003_1
      CR00357
    Associated_feature: WBsf988775
      WBsf221785
    Transcription_factor: WBTranscriptionFactor000229
  Experimental_info: RNAi_result: WBRNAi00007738 Inferred_automatically: RNAi_primary
      WBRNAi00014041 Inferred_automatically: RNAi_primary
      WBRNAi00031518 Inferred_automatically: RNAi_primary
      WBRNAi00077941 Inferred_automatically: RNAi_primary
      WBRNAi00045815 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr7527
      Expr1024228
      Expr1034015
      Expr1149723
      Expr2009372
      Expr2027608
    Drives_construct: WBCnstr00012672
      WBCnstr00032374
    Construct_product: WBCnstr00032374
    Microarray_results (20)
    Expression_cluster (132)
    Interaction (43)
  Map_info: Map: II Position: 0.823826
    Positive: Positive_clone: F28C6 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027309
    WBPaper00053597
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene