WormBase Tree Display for Gene: WBGene00009203
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| WBGene00009203 | SMap | S_parent | Sequence | F28C6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | aptf-3 | Person_evidence | WBPerson3268 | |||||
| Sequence_name | F28C6.2 | ||||||||
| Molecular_name | F28C6.2 | ||||||||
| F28C6.2.1 | |||||||||
| CE03273 | |||||||||
| Other_name | CELE_F28C6.2 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | aptf-3 | ||||||||
| DB_info | Database | AceView | gene | 2I883 | |||||
| WormQTL | gene | WBGene00009203 | |||||||
| WormFlux | gene | WBGene00009203 | |||||||
| NDB | locus_tag | CELE_F28C6.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009203|UniProtKB=Q19862 | |||||||
| family | PTHR10812 | ||||||||
| NCBI | gene | 185047 | |||||||
| RefSeq | protein | NM_063418.3 | |||||||
| TREEFAM | TREEFAM_ID | TF313718 | |||||||
| TrEMBL | UniProtAcc | Q19862 | |||||||
| UniProt_GCRP | UniProtAcc | Q19862 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 02 Sep 2013 16:45:43 | WBPerson2970 | Name_change | CGC_name | aptf-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | aptf | ||||||||
| Allele (28) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (32) | |||||||||
| Paralog | WBGene00009202 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00019424 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00014975 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
| WBGene00013383 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | aptf-3 encodes one of four C. elegans AP-2-like transcription factors; APTF-3 is ~60% identical to that of APTF-4, which lies adjacent to aptf-3 on chromosome II; loss of aptf-3 activity via large-scale RNAi results in some embryonic lethality and low levels of larval arrest, body morphology defects, and uncoordinated locomotion. | Paper_evidence | WBPaper00005599 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 03 Jul 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II and regulation of cell population proliferation. Predicted to be located in nucleus. Expressed in head neurons and intestine. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F28C6.2 | |||||||
| Corresponding_transcript | F28C6.2.1 | ||||||||
| Other_sequence | CRC08003_1 | ||||||||
| CR00357 | |||||||||
| Associated_feature | WBsf988775 | ||||||||
| WBsf221785 | |||||||||
| Transcription_factor | WBTranscriptionFactor000229 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00007738 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00014041 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031518 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00077941 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00045815 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7527 | ||||||||
| Expr1024228 | |||||||||
| Expr1034015 | |||||||||
| Expr1149723 | |||||||||
| Expr2009372 | |||||||||
| Expr2027608 | |||||||||
| Drives_construct | WBCnstr00012672 | ||||||||
| WBCnstr00032374 | |||||||||
| Construct_product | WBCnstr00032374 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (132) | |||||||||
| Interaction | WBInteraction000032509 | ||||||||
| WBInteraction000172441 | |||||||||
| WBInteraction000196670 | |||||||||
| WBInteraction000222698 | |||||||||
| WBInteraction000248128 | |||||||||
| WBInteraction000265896 | |||||||||
| WBInteraction000273106 | |||||||||
| WBInteraction000276294 | |||||||||
| WBInteraction000282888 | |||||||||
| WBInteraction000292783 | |||||||||
| WBInteraction000316116 | |||||||||
| WBInteraction000344501 | |||||||||
| WBInteraction000352339 | |||||||||
| WBInteraction000359348 | |||||||||
| WBInteraction000359456 | |||||||||
| WBInteraction000362494 | |||||||||
| WBInteraction000364849 | |||||||||
| WBInteraction000388556 | |||||||||
| WBInteraction000391918 | |||||||||
| WBInteraction000394945 | |||||||||
| WBInteraction000398559 | |||||||||
| WBInteraction000405932 | |||||||||
| WBInteraction000412866 | |||||||||
| WBInteraction000419221 | |||||||||
| WBInteraction000426080 | |||||||||
| WBInteraction000448263 | |||||||||
| WBInteraction000448503 | |||||||||
| WBInteraction000461001 | |||||||||
| WBInteraction000461318 | |||||||||
| WBInteraction000461589 | |||||||||
| WBInteraction000513047 | |||||||||
| WBInteraction000525982 | |||||||||
| WBInteraction000525983 | |||||||||
| WBInteraction000525984 | |||||||||
| WBInteraction000525985 | |||||||||
| WBInteraction000526241 | |||||||||
| WBInteraction000527262 | |||||||||
| WBInteraction000527540 | |||||||||
| WBInteraction000527600 | |||||||||
| WBInteraction000527701 | |||||||||
| WBInteraction000527782 | |||||||||
| WBInteraction000527954 | |||||||||
| WBInteraction000547924 | |||||||||
| Map_info | Map | II | Position | 0.823826 | |||||
| Positive | Positive_clone | F28C6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00053597 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
