WormBase Tree Display for Gene: WBGene00009133
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| WBGene00009133 | SMap | S_parent | Sequence | F25H8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | bed-3 | Person_evidence | WBPerson1105 | |||||
| WBPerson625 | |||||||||
| WBPerson1997 | |||||||||
| Sequence_name | F25H8.6 | ||||||||
| Molecular_name | F25H8.6 | ||||||||
| F25H8.6.1 | |||||||||
| CE05731 | |||||||||
| Other_name | zbed-6 | Person_evidence | WBPerson1105 | ||||||
| WBPerson625 | |||||||||
| CELE_F25H8.6 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | bed-3 | ||||||||
| DB_info | Database | AceView | gene | 4K689 | |||||
| WormQTL | gene | WBGene00009133 | |||||||
| WormFlux | gene | WBGene00009133 | |||||||
| NDB | locus_tag | CELE_F25H8.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009133|UniProtKB=Q19787 | |||||||
| family | PTHR46169 | ||||||||
| NCBI | gene | 184940 | |||||||
| RefSeq | protein | NM_069384.6 | |||||||
| SwissProt | UniProtAcc | Q19787 | |||||||
| TREEFAM | TREEFAM_ID | TF319218 | |||||||
| UniProt_GCRP | UniProtAcc | Q19787 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 02 Feb 2007 10:20:45 | WBPerson2970 | Name_change | CGC_name | zbed-6 | ||||
| 3 | 07 Dec 2009 09:44:50 | WBPerson2970 | Name_change | CGC_name | bed-3 | ||||
| Other_name | zbed-6 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | bed | ||||||||
| Allele (75) | |||||||||
| Strain | WBStrain00030951 | ||||||||
| WBStrain00030952 | |||||||||
| WBStrain00037174 | |||||||||
| WBStrain00037326 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (30) | |||||||||
| Paralog | WBGene00008283 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00010704 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00015247 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00015662 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | bed-3 encodes a protein that contains a BED-type zinc finger domain; loss of bed-3 activity in large-scale RNAi screens indicates that bed-3 is required for larval development. | Paper_evidence | WBPaper00035599 | |||||
| Curator_confirmed | WBPerson12884 | ||||||||
| WBPerson1843 | |||||||||
| Date_last_updated | 17 May 2011 00:00:00 | ||||||||
| Automated_description | Enables RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in molting cycle; regulation of cell division; and vulval cell fate specification. Predicted to be located in nucleus. Expressed in M lineage cell; hypodermal cell; and vulval cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F25H8.6 | |||||||
| Corresponding_transcript | F25H8.6.1 | ||||||||
| Other_sequence | EY465362.1 | ||||||||
| Oden_isotig17191 | |||||||||
| Oden_isotig17192 | |||||||||
| ACC27104_1 | |||||||||
| JI170714.1 | |||||||||
| Associated_feature (28) | |||||||||
| Transcription_factor | WBTranscriptionFactor000994 | ||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern | Expr8889 | ||||||||
| Expr12430 | |||||||||
| Expr12581 | |||||||||
| Expr13745 | |||||||||
| Expr1028711 | |||||||||
| Expr1033981 | |||||||||
| Expr1149473 | |||||||||
| Expr2009591 | |||||||||
| Expr2027828 | |||||||||
| Drives_construct | WBCnstr00013582 | ||||||||
| WBCnstr00021053 | |||||||||
| WBCnstr00021942 | |||||||||
| WBCnstr00037858 | |||||||||
| Construct_product | WBCnstr00037858 | ||||||||
| WBCnstr00038796 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (221) | |||||||||
| Interaction (41) | |||||||||
| Map_info | Map | IV | Position | 4.44662 | Error | 0.001235 | |||
| Positive | Positive_clone | F25H8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (14) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
