WormBase Tree Display for Gene: WBGene00009089
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| WBGene00009089 | SMap | S_parent | Sequence | F23D12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | jmjd-3.2 | Person_evidence | WBPerson1422 | |||||
| Sequence_name | F23D12.5 | ||||||||
| Molecular_name | F23D12.5 | ||||||||
| F23D12.5.1 | |||||||||
| CE15893 | |||||||||
| Other_name | CELE_F23D12.5 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | jmjd-3.2 | ||||||||
| DB_info | Database | AceView | gene | XP71 | |||||
| WormQTL | gene | WBGene00009089 | |||||||
| WormFlux | gene | WBGene00009089 | |||||||
| NDB | locus_tag | CELE_F23D12.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009089|UniProtKB=Q19760 | |||||||
| family | PTHR14017 | ||||||||
| NCBI | gene | 181543 | |||||||
| RefSeq | protein | NM_078004.6 | |||||||
| TREEFAM | TREEFAM_ID | TF317405 | |||||||
| TrEMBL | UniProtAcc | Q19760 | |||||||
| UniProt_GCRP | UniProtAcc | Q19760 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 30 Sep 2011 16:40:15 | WBPerson2970 | Name_change | CGC_name | jmjd-3.2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | jmjd | ||||||||
| Allele (118) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00065772 | ||||||||
| 00065773 | |||||||||
| 00065774 | |||||||||
| 00065775 | |||||||||
| 00065776 | |||||||||
| 00065777 | |||||||||
| 00065778 | |||||||||
| 00065779 | |||||||||
| Ortholog (29) | |||||||||
| Paralog | WBGene00007813 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00017046 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| WBGene00017571 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | F23D12.5 encodes a putative histone H3 di/trimethyllysine-27 (H3K27me2/me3) demethylase; F23D12.5 contains a C-terminal JmjC domain, and is homologous to human JMJD3, UTX (OMIM:300128), and UTY (OMIM:400009); F23D12.5 is expected to antagonize transcriptional repression by polycomb repressor complexes, which mark stem cells (and presumably germline) by H3K27me3-mediated repression of somatic genes; however, F23D12.5 has no obvious function in mass RNAi assays. | Paper_evidence | WBPaper00030964 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 01 Oct 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; chromatin DNA binding activity; and histone H3K27me2/H3K27me3 demethylase activity. Predicted to be involved in regulation of gene expression. Predicted to be located in nucleus. Predicted to be part of MLL3/4 complex. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F23D12.5 | |||||||
| Corresponding_transcript | F23D12.5.1 | ||||||||
| Other_sequence | CRC12491_1 | ||||||||
| CRC05706_1 | |||||||||
| CR04641 | |||||||||
| CR05874 | |||||||||
| CRC07734_1 | |||||||||
| CR04240 | |||||||||
| Associated_feature | WBsf1007909 | ||||||||
| WBsf236674 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00103686 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00031321 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00013815 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00091503 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00045412 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1024582 | ||||||||
| Expr1033960 | |||||||||
| Expr1149336 | |||||||||
| Expr2012889 | |||||||||
| Expr2031123 | |||||||||
| Drives_construct | WBCnstr00032473 | ||||||||
| Construct_product | WBCnstr00032473 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (166) | |||||||||
| Interaction (241) | |||||||||
| Map_info | Map | X | Position | 16.7056 | |||||
| Positive | Positive_clone | F23D12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00030964 | ||||||||
| WBPaper00038372 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00039978 | |||||||||
| WBPaper00047514 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061216 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
