WormBase Tree Display for Gene: WBGene00008741
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| WBGene00008741 | SMap | S_parent | Sequence | F13D12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ctsa-1.2 | |||||||
| Sequence_name | F13D12.6 | ||||||||
| Molecular_name | F13D12.6 | ||||||||
| F13D12.6.1 | |||||||||
| CE02185 | |||||||||
| Other_name | CELE_F13D12.6 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | ctsa-1.2 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 11 Dec 2018 16:50:34 | WBPerson1983 | Name_change | CGC_name | ctsa-1.2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ctsa | ||||||||
| Allele (78) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00047858 | ||||||||
| 00047859 | |||||||||
| 00047860 | |||||||||
| 00047861 | |||||||||
| 00047862 | |||||||||
| 00116598 | |||||||||
| 00116599 | |||||||||
| Ortholog (33) | |||||||||
| Paralog | WBGene00007462 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00017969 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00019617 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00018271 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00012445 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00021503 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00019605 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00012530 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00009058 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | F13D12.6 is orthologous to the human gene SIMILAR TO PROTECTIVE PROTEIN FOR BETA-GALACTOSIDASE (GALACTOSIALIDOSIS) (PPGB; OMIM:256540), which when mutated leads to disease. | Curator_confirmed | WBPerson1823 | |||||
| WBPerson567 | |||||||||
| Date_last_updated | 06 Aug 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable serine-type carboxypeptidase activity. Predicted to be involved in proteolysis. Expressed in intestine. Human ortholog(s) of this gene implicated in galactosialidosis. Is an ortholog of human CTSA (cathepsin A). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:3211 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9251) | ||||
| DOID:0080540 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9251) | ||||||
| Molecular_info | Corresponding_CDS | F13D12.6 | |||||||
| Corresponding_transcript | F13D12.6.1 | ||||||||
| Other_sequence (59) | |||||||||
| Associated_feature | WBsf644717 | ||||||||
| WBsf658273 | |||||||||
| WBsf717040 | |||||||||
| WBsf989873 | |||||||||
| WBsf222190 | |||||||||
| WBsf222191 | |||||||||
| WBsf222192 | |||||||||
| WBsf222193 | |||||||||
| Experimental_info | RNAi_result (20) | ||||||||
| Expr_pattern | Expr8738 | ||||||||
| Expr1018994 | |||||||||
| Expr1033810 | |||||||||
| Expr1148453 | |||||||||
| Expr2002510 | |||||||||
| Expr2020728 | |||||||||
| Drives_construct | WBCnstr00013497 | ||||||||
| WBCnstr00032729 | |||||||||
| Construct_product | WBCnstr00016653 | ||||||||
| WBCnstr00016654 | |||||||||
| WBCnstr00032729 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (281) | |||||||||
| Interaction (67) | |||||||||
| Map_info | Map | II | Position | 4.02469 | |||||
| Positive | Positive_clone | F13D12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00032236 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041771 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058665 | |||||||||
| WBPaper00059839 | |||||||||
| WBPaper00064354 | |||||||||
| WBPaper00065080 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
