WormBase Tree Display for Gene: WBGene00008542
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WBGene00008542 | SMap | S_parent | Sequence | F07A5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | scav-6 | |||||||
Sequence_name | F07A5.3 | ||||||||
Molecular_name | F07A5.3 | ||||||||
F07A5.3.1 | |||||||||
CE05556 | |||||||||
Other_name | CELE_F07A5.3 | Accession_evidence | NDB | BX284601 | |||||
Public_name | scav-6 | ||||||||
DB_info | Database | AceView | gene | 1H935 | |||||
WormQTL | gene | WBGene00008542 | |||||||
WormFlux | gene | WBGene00008542 | |||||||
NDB | locus_tag | CELE_F07A5.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00008542|UniProtKB=Q19140 | |||||||
family | PTHR11923 | ||||||||
NCBI | gene | 184107 | |||||||
RefSeq | protein | NM_059680.6 | |||||||
TrEMBL | UniProtAcc | Q19140 | |||||||
UniProt_GCRP | UniProtAcc | Q19140 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 08 Mar 2010 11:14:55 | WBPerson2970 | Name_change | CGC_name | scav-6 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | scav | ||||||||
Allele (38) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00063644 | ||||||||
00063645 | |||||||||
00063646 | |||||||||
00063647 | |||||||||
00116429 | |||||||||
Ortholog (46) | |||||||||
Paralog | WBGene00015389 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00013039 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00013578 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00011076 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00008692 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
Structured_description | Automated_description | Predicted to enable scavenger receptor activity. Predicted to be involved in endocytosis. Predicted to be located in cytoplasm. Is an ortholog of human SCARB1 (scavenger receptor class B member 1). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F07A5.3 | |||||||
Corresponding_transcript | F07A5.3.1 | ||||||||
Other_sequence | Acan_isotig10737 | ||||||||
ACC16041_1 | |||||||||
FC551589.1 | |||||||||
Dviv_isotig13385 | |||||||||
CBC06372_1 | |||||||||
EX914354.1 | |||||||||
FC551042.1 | |||||||||
HBC15354_1 | |||||||||
Dviv_isotig13386 | |||||||||
Dviv_isotig13384 | |||||||||
Associated_feature | WBsf643447 | ||||||||
WBsf643448 | |||||||||
WBsf218001 | |||||||||
Experimental_info (6) | |||||||||
Map_info | Map | I | Position | 1.9626 | Error | 0.006798 | |||
Positive | Positive_clone | F07A5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00010266 | ||||||||
WBPaper00018248 | |||||||||
WBPaper00018249 | |||||||||
WBPaper00032930 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00065146 | |||||||||
WBPaper00065331 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |