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WormBase Tree Display for Gene: WBGene00008493

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Name Class

WBGene00008493SMapS_parentSequenceF01D5
IdentityVersion1
NameSequence_nameF01D5.2
Molecular_nameF01D5.2
F01D5.2.1
CE18560
Other_nameCELE_F01D5.2Accession_evidenceNDBBX284602
Public_nameF01D5.2
DB_infoDatabaseAceViewgene2O288
WormQTLgeneWBGene00008493
WormFluxgeneWBGene00008493
NDBlocus_tagCELE_F01D5.2
PanthergeneCAEEL|WormBase=WBGene00008493|UniProtKB=Q9XVB0
familyPTHR21724
NCBIgene184056
RefSeqproteinNM_064532.2
TREEFAMTREEFAM_IDTF318899
TrEMBLUniProtAccQ9XVB0
UniProt_GCRPUniProtAccQ9XVB0
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:49WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (13)
RNASeq_FPKM (74)
OrthologWBGene00124497Caenorhabditis japonicaFrom_analysisOMA
TreeFam
WBGene00039732Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00146112Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WormBase-Compara
CSP40.g5614Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cni-F01D5.3Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g19489Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00020.g1208Caenorhabditis sinicaFrom_analysisWormBase-Compara
chrII_pilon.g6465Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00092346Pristionchus pacificusFrom_analysisWormBase-Compara
Paralog (60)
Structured_descriptionAutomated_descriptionEnriched in intestine based on tiling array and RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by thirty chemicals including rotenone; Tunicamycin; and Rifampin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: ShK domain-like and ShKT domain.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF01D5.2
Corresponding_transcriptF01D5.2.1
Associated_featureWBsf990576
WBsf224235
Experimental_infoRNAi_resultWBRNAi00012725Inferred_automaticallyRNAi_primary
WBRNAi00103250Inferred_automaticallyRNAi_primary
WBRNAi00043728Inferred_automaticallyRNAi_primary
WBRNAi00030527Inferred_automaticallyRNAi_primary
Expr_patternExpr1015243
Expr1147714
Expr2002184
Expr2020405
Drives_constructWBCnstr00032926
Construct_productWBCnstr00032926
Microarray_results (19)
Expression_clusterWBPaper00029047:atx-3_downregulated
WBPaper00031040:Cluster_4
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:intestine_larva_enriched
WBPaper00038237:age-1_upregulated_intestine_rescue
WBPaper00038237:age-1_upregulated_neuron_rescue
WBPaper00038237:age-1_upregulated_nontransgenic
WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00040560:hpl-2_embryo_downregulated
WBPaper00042215:wdr-23(tm1817)_upregulated
WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
WBPaper00044030:nhr-8(hd117)_upregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044656:tatn-1(qd182)_upregulated
WBPaper00044736:oscillating_dev_expression
WBPaper00045316:prg-1_upregulated_L1
WBPaper00045316:prg-1_upregulated_L3
WBPaper00045390:tunicamycin_upregulated
WBPaper00045401:N.parisii_40h_downregulated
WBPaper00045401:N.parisii_64h_downregulated
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00046496:Rifampicin_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00047131:daf-2(e1370)_upregulated_N2-background
WBPaper00047132:glp-1(ts)-25C_upregulated
WBPaper00047132:glp-1(ts)-25C_upregulated_skn-1-dependent
WBPaper00047132:skn-1(RNAi)_downregulated
WBPaper00047132:skn-1(RNAi)_downregulated_glp-1(ts)-dependent
WBPaper00048926:miaserin_upregulated_adult-day10
WBPaper00049018:ham-3(RNAi)_downregulated
WBPaper00049018:swsn-2.2(RNAi)_upregulated
WBPaper00049334:CE_intestine_enriched
WBPaper00049498:npr-1(ur89)_regulated_7
WBPaper00049545:cco-1(RNAi)_downregulated
WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
WBPaper00049920:hyl-2(tm2031)_upregulated
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050096:P.aeruginosa_upregulated
WBPaper00050370:dpy-21(e428)_L3_downregulated
WBPaper00050412:cco-1(RNAi)_downregulated_N2
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050504:hrp-2(RNAi)_downregulated
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050887:Lactoferrin_upregulated
WBPaper00051039:intestine_enriched
WBPaper00053302:alovudine_24h_regulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053771:down_by_skn-1(RNAi)_at_3h-NaCl
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00053814:OP50_vs_PY79_downregulated_PY79
WBPaper00054758:alg-1(gk204)_downregulated
WBPaper00054872:egl-9(sa307)_upregulated
WBPaper00055013:hmg-3(bar24)_upregulated
WBPaper00055060:flr-1(RNAi)_downregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Psora_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055354:Rifampicin-Psora_downregulated
WBPaper00055386:daf-2(e1370)_upregulated
WBPaper00055386:eat-2(ad465)_upregulated
WBPaper00055944:C.butyricum_vs_OP50_downregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_downregulated_N2
WBPaper00056275:P.aeruginosa_upregulated
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00056586:kri-1(ok1251)_upregulated
WBPaper00057006:DietaryRestriction_downregulated
WBPaper00057196:raga-1(ok386)_upregulated)
WBPaper00057265:metaformin_downregulated_OP50
WBPaper00057347:nhr-14(tm1473)_upreglated
WBPaper00058648:Y37A1B.5(RNAi)_upregulated
WBPaper00058711:skn-1(lax188)_upregulated
WBPaper00058711:wdr-5(ok1417)_downregulated
WBPaper00058948:PA14_downregulated
WBPaper00059117:B.subtilis_upregulated
WBPaper00059421:daf-1(m40);daf-3(mgDf90)_upregulated
WBPaper00059421:daf-1(m40)_upregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059728:20ug_cholesterol_upregulated
WBPaper00059735:glucose_downregulated_lpin-1(RNAi)
WBPaper00059735:glucose_downregulated_N2
WBPaper00059839:S.maltophilia_regulated
WBPaper00060100:SiNP_upregulated_mRNA
WBPaper00060273:isp-1(qm150)_downregulated
WBPaper00060273:vrk-1(RNAi)_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060399:CoCl2_6hr_upregulated_N2
WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
WBPaper00060434:pH4.33_vs_pH6.33_uprgulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060911:prx-5(RNAi)_downregulated_mRNA
WBPaper00061007:HB101_upregulated
WBPaper00061007:M.braciatum_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061007:X.citri_upregulated
WBPaper00061040:eat-2(ad1116)_upregulated
WBPaper00061081:E.faecalis_downregulated_N2
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061424:Diet_MYb120_upregulated
WBPaper00061527:C17H12.6-swt-6
WBPaper00061530:nhr-49(e2144)_downregulated
WBPaper00061753:csr-1(tor159)_upregulated_20C
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00061952:daf-18(nr2037)_downregulated
WBPaper00062078:NMR-HspB1_regulated
WBPaper00062184:PA14_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062345:bortezomib_4h_upregulated_N2
WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064130:Beta-Amyloid_24h_upregulated_mRNA
WBPaper00064494:postdauer_downregulated_WholeAnimal
WBPaper00064509:static-magnetic-field_upregulated
WBPaper00064532:pals-22(jy3)_downregulated
WBPaper00064539:nhr-114(gk849)_upregulated
WBPaper00064716:paraquat_downregulated
WBPaper00064728:cpl-1(W32AY35A)_upregulated
WBPaper00064769:him-17(me24)_upregulated
WBPaper00064788:ketamine_upregulated
WBPaper00064871:P.fluorescens_upregulated_AWA
WBPaper00064871:PA14_upregulated_AWA
WBPaper00065005:sams-5(RNAi)_downregulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065096:npr-8(ok1439)_upregulated_Day1_25C
WBPaper00065288:mdt-15(tm2182)_downregulated
WBPaper00065392:Lb.delbrueckii_downregulated
WBPaper00065392:Lb.gasseri_downregulated
WBPaper00065392:Lb.plantarum_downregulated
WBPaper00065392:Lb.reuteri_downregulated
WBPaper00065392:Lb.rhamnosus_downregulated
WBPaper00065392:P.pentosaceus_downregulated
WBPaper00065581:hpk-1(pk1393)_downregulated
WBPaper00065835:Day5_vs_Day1_upregulated
WBPaper00065835:mtH2S-AP39-D0-treatment_upregulated_Day11
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
cgc4386_cluster_2_2
cgc4489_group_25
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00028482:PA14_upregulated
WBPaper00028789:PA14_vs_OP50_upregulated_4hr
WBPaper00028789:pmk-1_upregulated
WBPaper00029437:rde-4_upregulated
WBPaper00031184:acrylamide_upregulated
WBPaper00031252:AIN-1_IP_enriched
WBPaper00031850:mdt-15(RNAi)_downregulated
WBPaper00032062:age_regulated_genes
WBPaper00033101:spr-5_regulated
WBPaper00034757:up_by_oxidative_stress
WBPaper00036130:mir-243_down_regulated
WBPaper00036286:Pattern_D
WBPaper00036464:S.aureus-RN6390_regulated
WBPaper00038231:Cry5B_1.5-fold_downregulated
WBPaper00038231:Cry5B_2-fold_downregulated
WBPaper00038462:aging_downregulated
WBPaper00040823:alg-1(gk214)_upregulated
WBPaper00040858:eQTL_age_regulated_aging
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_aging
WBPaper00040858:eQTL_regulated_juvenile
WBPaper00040858:eQTL_regulated_reproductive
WBPaper00040963:Q50_up
WBPaper00040963:Q100_down
WBPaper00040963:Q200_down
WBPaper00040963:TA300_up
WBPaper00041002:HF_3d_2.0mM_Up
WBPaper00041002:HF_11d_0.2mM_Up
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_24h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_24h
WBPaper00044535:male_downregulated
WBPaper00045015:acs-3(ft5)_downregulated
WBPaper00045263:isp-1(qm150)_upregulated
WBPaper00046083:pmk-1(km25)_OP50_downregulated
WBPaper00046548:dafachronic-acid_downregulated
WBPaper00047070:DAF-16-dependent_UV_response
WBPaper00047070:N2_UV_upregulated
WBPaper00047070:xpa-1_UV_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00050767:Octopamine_induced
WBPaper00053236:Starvation_regulated_N2
WBPaper00055899:2,4-Dinitroanisole_regulated
WBPaper00055899:nitrotriazolone_regulated
[cgc6390]:male_sex-enriched
InteractionWBInteraction000541045
Map_infoPositivePositive_cloneF01D5Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionII22.0376
MethodGene