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WormBase Tree Display for Gene: WBGene00008488

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Name Class

WBGene00008488SMapS_parentSequenceF01D4
IdentityVersion1
NameSequence_nameF01D4.5
Molecular_nameF01D4.5a
F01D4.5a.1
CE29035
F01D4.5b
CE29036
F01D4.5b.1
F01D4.5b.2
F01D4.5b.3
Other_nameCELE_F01D4.5Accession_evidenceNDBBX284604
Public_nameF01D4.5
DB_infoDatabaseAceViewgene4L248
WormQTLgeneWBGene00008488
WormFluxgeneWBGene00008488
NDBlocus_tagCELE_F01D4.5
NCBIgene177941
RefSeqproteinNM_069536.6
NM_001392390.1
TREEFAMTREEFAM_IDTF316155
TrEMBLUniProtAccO17753
Q95QN4
UniProt_GCRPUniProtAccO17753
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:49WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (16)
RNASeq_FPKM (74)
GO_annotation00030605
Ortholog (29)
Structured_descriptionAutomated_descriptionPredicted to enable metal ion binding activity. Expressed in hypodermis; male gonad; nervous system; and vulva.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF01D4.5a
F01D4.5b
Corresponding_CDS_historyF01D4.5:wp62
Corresponding_transcriptF01D4.5a.1
F01D4.5b.1
F01D4.5b.2
F01D4.5b.3
Other_sequenceCJC07626_1
CBC00040_1
Associated_featureWBsf652134
WBsf668251
WBsf230746
WBsf230747
Experimental_infoRNAi_resultWBRNAi00043721Inferred_automaticallyRNAi_primary
WBRNAi00012718Inferred_automaticallyRNAi_primary
WBRNAi00030523Inferred_automaticallyRNAi_primary
Expr_patternExpr14706
Expr14707
Expr1027182
Expr1033694
Expr1147707
Expr2002180
Expr2020401
Drives_constructWBCnstr00032931
WBCnstr00041303
Construct_productWBCnstr00032931
Regulate_expr_clusterWBPaper00056718:F01D4.5(baf20)_downregulated
WBPaper00056718:F01D4.5(baf20)_upregulated
Microarray_results (28)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00032097:CGH-1-associated-mRNA
WBPaper00035269:cde-1_regulated
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:pharyngeal-muscle_embryo_enriched
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00042561:smg-2(RNAi)_downregulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00044760:germline_specific
WBPaper00045521:Gender_Neutral
WBPaper00045618:puf-8_downregulated
WBPaper00045774:clk-1_downregulated
WBPaper00046509:lin-35(n745)_upregulated
WBPaper00047132:skn-1(RNAi)_downregulated_glp-1(ts)-dependent
WBPaper00048611:MnCl2_downregulated
WBPaper00048762:FOG-1_associated
WBPaper00048762:FOG-3_associated
WBPaper00048988:daf-2(e1370)_downregulated_neuron
WBPaper00048988:neuron_expressed
WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050234:lin-28(RNAi)_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00051039:germline_enriched
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053302:stavudine_72h_regulated
WBPaper00054493:hpl-2(tm1489)_downregulated
WBPaper00054758:alg-1(gk204)_downregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055565:AVK_enriched
WBPaper00055648:germline_expressed
WBPaper00055827:pfd-6(gk493446)_upregulated
WBPaper00056034:pals-22(jy3)_downregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056284:ints-5(RNAi)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056718:F01D4.5(baf20)_downregulated
WBPaper00056809:smn-1(ok355)_downregulated
WBPaper00056826:SGP_biased
WBPaper00058598:mex-3(eu149)_downregulated
WBPaper00058598:sin-3(tm1276)_upregulated
WBPaper00058958:100mGy-irradiation-72h_downregulated
WBPaper00059471:EGL-43_interacting
WBPaper00059664:srbc-48(ac23)_downregulated
WBPaper00059824:rnp-6(dh1127)_regulated_OP50
WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
WBPaper00060014:set-2(tm1630)_upregulated
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00060951:mrpl-2(osa3)_upregulated
WBPaper00061007:S.aquatilis_downregulated
WBPaper00061203:let-418(n3536)_downregulated
WBPaper00061203:sin-3(tm1276)_downregulated
WBPaper00061203:spr-1(ok2144)_downregulated
WBPaper00061340:Neuroblast_I6_M5
WBPaper00061340:Neuroblast_PVC_LUA
WBPaper00061340:OLQ_grandparent
WBPaper00061340:RIB
WBPaper00061340:URA_parent
WBPaper00061439:unc-30(ok613)_downregulated
WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
WBPaper00061527:F54E7.8-orc-5_6376
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062193:hsf-1(RNAi)_downregulated
WBPaper00062193:skn-1(RNAi)_downregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062446:nhr-8(hd117)_downregulated
WBPaper00062498:PPM-1.D_interacting
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
WBPaper00064716:paraquat_upregulated
WBPaper00065096:25C_vs_20C_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066110:tetraploid_vs_diploid_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4489_group_2
WBPaper00025032:cluster_121
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00030985:Erwinia_carotovora_upregulated
WBPaper00031003:24hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00031532:Larva_Pan_Neuronal_Enriched
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00035905:FBF-1_Associated
WBPaper00036123:Fluoranthene_regulated
WBPaper00036130:mir-243_down_regulated
WBPaper00038427:lin-54_embryo_changed
WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2down
WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_developing
WBPaper00040858:eQTL_regulated_reproductive
WBPaper00040963:TA300_down
WBPaper00041606:CE_B.thuringiensis-DB27_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00046083:ogt-1(ok1474)_OP50_upregulated
WBPaper00046083:pmk-1(km25)_OP50_upregulated
WBPaper00047070:N2_starvation_downregulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00048989:N2_rapamycin_downregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
WBPaper00056330:mrps-5(RNAi)_downregulated
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(53_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc6390]:Cluster_E
[cgc6390]:oogenesis-enriched
Interaction (23)
Map_infoPositivePositive_cloneF01D4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIV4.60461
ReferenceWBPaper00030887
WBPaper00051614
MethodGene