WormBase Tree Display for Gene: WBGene00008405
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| WBGene00008405 | SMap | S_parent | Sequence | CHROMOSOME_II | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | ttll-12 | Person_evidence | WBPerson625 | |||||
| Sequence_name | D2013.9 | ||||||||
| Molecular_name | D2013.9 | ||||||||
| D2013.9.1 | |||||||||
| CE01535 | |||||||||
| Other_name | set-7 | Person_evidence | WBPerson4819 | ||||||
| WBPerson268 | |||||||||
| WBPerson632 | |||||||||
| CELE_D2013.9 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | ttll-12 | ||||||||
| DB_info | Database | AceView | gene | 2J631 | |||||
| WormQTL | gene | WBGene00008405 | |||||||
| WormFlux | gene | WBGene00008405 | |||||||
| NDB | locus_tag | CELE_D2013.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00008405|UniProtKB=Q09512 | |||||||
| family | PTHR46088 | ||||||||
| NCBI | gene | 174480 | |||||||
| RefSeq | protein | NM_063589.7 | |||||||
| SwissProt | UniProtAcc | Q09512 | |||||||
| TREEFAM | TREEFAM_ID | TF313037 | |||||||
| UniProt_GCRP | UniProtAcc | Q09512 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 03 May 2007 10:33:07 | WBPerson2970 | Name_change | CGC_name | set-7 | ||||
| 3 | 29 May 2007 08:52:01 | WBPerson2970 | Name_change | CGC_name | ttll-12 | ||||
| Other_name | set-7 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ttll | ||||||||
| Allele (35) | |||||||||
| Strain | WBStrain00001885 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00054464 | ||||||||
| 00054465 | |||||||||
| 00054466 | |||||||||
| 00054467 | |||||||||
| 00054468 | |||||||||
| 00054469 | |||||||||
| 00054470 | |||||||||
| 00054471 | |||||||||
| 00054472 | |||||||||
| 00116308 | |||||||||
| Contained_in_operon | CEOP2424 | ||||||||
| Ortholog (35) | |||||||||
| Paralog | WBGene00008331 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00010630 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00014232 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00019230 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00044187 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | ttll-12 encodes a putative tubulin polyaminoacid ligase (possibly a polyglycylase) orthologous to human TTLL12; TTLL-12 is expressed in intestine and renal gland cells. | Paper_evidence | WBPaper00006525 | |||||
| WBPaper00029411 | |||||||||
| WBPaper00029412 | |||||||||
| WBPaper00029413 | |||||||||
| WBPaper00029414 | |||||||||
| WBPaper00029415 | |||||||||
| WBPaper00029416 | |||||||||
| WBPaper00030864 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 27 Jul 2012 00:00:00 | ||||||||
| Automated_description | Predicted to enable ATP binding activity. Involved in egg-laying behavior. Located in endoplasmic reticulum; sarcomere; and striated muscle dense body. Is an ortholog of human TTLL12 (tubulin tyrosine ligase like 12). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | D2013.9 | |||||||
| Corresponding_transcript | D2013.9.1 | ||||||||
| Other_sequence (33) | |||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern | Expr5622 | ||||||||
| Expr9427 | |||||||||
| Expr1020128 | |||||||||
| Expr1033643 | |||||||||
| Expr1147441 | |||||||||
| Expr2017566 | |||||||||
| Expr2035705 | |||||||||
| Drives_construct | WBCnstr00002676 | ||||||||
| Construct_product | WBCnstr00013992 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (127) | |||||||||
| SAGE_tag (17) | |||||||||
| Interaction (20) | |||||||||
| Map_info | Map | II | Position | 1.28586 | Error | 0.002503 | |||
| Positive | Positive_clone | D2013 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00030864 | ||||||||
| WBPaper00034662 | |||||||||
| WBPaper00036383 | |||||||||
| WBPaper00038372 | |||||||||
| WBPaper00038444 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00045213 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00063143 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
