WormBase Tree Display for Gene: WBGene00008338
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| WBGene00008338 | SMap | S_parent | Sequence | C55A6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | pafo-1 | Person_evidence | WBPerson634 | |||||
| Sequence_name | C55A6.9 | ||||||||
| Molecular_name | C55A6.9 | ||||||||
| C55A6.9.1 | |||||||||
| CE20614 | |||||||||
| Other_name | CELE_C55A6.9 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | pafo-1 | ||||||||
| DB_info | Database | AceView | gene | 5M3 | |||||
| WormQTL | gene | WBGene00008338 | |||||||
| WormFlux | gene | WBGene00008338 | |||||||
| NDB | locus_tag | CELE_C55A6.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00008338|UniProtKB=P90783 | |||||||
| family | PTHR23188 | ||||||||
| NCBI | gene | 179583 | |||||||
| RefSeq | protein | NM_073524.5 | |||||||
| SwissProt | UniProtAcc | P90783 | |||||||
| TREEFAM | TREEFAM_ID | TF313642 | |||||||
| UniProt_GCRP | UniProtAcc | P90783 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 10 Mar 2014 11:27:18 | WBPerson2970 | Name_change | CGC_name | pafo-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pafo | ||||||||
| Allele (25) | |||||||||
| Strain | WBStrain00051176 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00049037 | ||||||||
| 00049038 | |||||||||
| 00049039 | |||||||||
| 00049040 | |||||||||
| 00049041 | |||||||||
| 00049042 | |||||||||
| 00049043 | |||||||||
| 00049044 | |||||||||
| 00116264 | |||||||||
| 00116265 | |||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00018374 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | pafo-1 encodes the C. elegans ortholog of mammalian and Saccharomyces cerevisiae PAF1 that is a member of the PAF1 (Polymerase-Associated Factor 1) complex; by homology PAFO-1 is predicted to function in the regulation of transcription. | Curator_confirmed | WBPerson1843 | |||||
| Date_last_updated | 23 Mar 2014 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA polymerase II complex binding activity and chromatin binding activity. Predicted to be involved in transcription elongation by RNA polymerase II. Located in nucleus. Is an ortholog of human PAF1 (PAF1 homolog, Paf1/RNA polymerase II complex component). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C55A6.9 | |||||||
| Corresponding_transcript | C55A6.9.1 | ||||||||
| Other_sequence (18) | |||||||||
| Associated_feature | WBsf647268 | ||||||||
| WBsf1001372 | |||||||||
| WBsf1001373 | |||||||||
| WBsf1020465 | |||||||||
| WBsf232512 | |||||||||
| WBsf232513 | |||||||||
| Experimental_info | RNAi_result (15) | ||||||||
| Expr_pattern | Expr11681 | ||||||||
| Expr1023039 | |||||||||
| Expr1033611 | |||||||||
| Expr1147197 | |||||||||
| Expr2014683 | |||||||||
| Expr2032916 | |||||||||
| Drives_construct | WBCnstr00033042 | ||||||||
| Construct_product | WBCnstr00033042 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (113) | |||||||||
| Interaction (82) | |||||||||
| Map_info | Map | V | Position | 3.18728 | |||||
| Positive | Positive_clone | C55A6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00045133 | |||||||||
| WBPaper00048493 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00063228 | |||||||||
| WBPaper00063960 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
