WormBase Tree Display for Gene: WBGene00008310

WBGene00008310 SMap: S_parent: Sequence: C54E10
  Identity: Version: 1
    Name: Sequence_name: C54E10.6
      Molecular_name: C54E10.6
        C54E10.6.1
        CE15734
      Other_name: CELE_C54E10.6 Accession_evidence: NDB BX284605
      Public_name: C54E10.6
    DB_info: Database: AceView gene 5T288
        WormQTL gene WBGene00008310
        WormFlux gene WBGene00008310
        NDB locus_tag CELE_C54E10.6
        NCBI gene 180228
        RefSeq protein NM_075274.4
        TrEMBL UniProtAcc O45316
        UniProt_GCRP UniProtAcc O45316
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:49 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (23)
    RNASeq_FPKM (74)
    Ortholog: WBGene00138016 Caenorhabditis japonica From_analysis: OMA
            Inparanoid_8
      WBGene00126537 Caenorhabditis japonica From_analysis: OMA
            Inparanoid_8
      WBGene00139457 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00087088 Caenorhabditis briggsae From_analysis: Inparanoid_8
      chrV_pilon.g17775 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in several structures, including head mesodermal cell; muscle cell; neurons; rectal muscle; and ventral nerve cord based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; pgl-1; and lin-35 based on microarray; tiling array; and RNA-seq studies. Is affected by thirteen chemicals including 1-methylnicotinamide; Alovudine; and stavudine based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C54E10.6
    Corresponding_transcript: C54E10.6.1
    Other_sequence: MP01441
      MA01100
    Associated_feature: WBsf653545
      WBsf1003014
      WBsf1003015
      WBsf1003016
      WBsf1021552
      WBsf1021553
      WBsf1021554
      WBsf235196
  Experimental_info: RNAi_result: WBRNAi00000783 Inferred_automatically: RNAi_primary
      WBRNAi00030144 Inferred_automatically: RNAi_primary
      WBRNAi00012395 Inferred_automatically: RNAi_primary
      WBRNAi00043153 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1021200
      Expr1033600
      Expr1147127
      Expr2001921
      Expr2020144
    Microarray_results (16)
    Expression_cluster: WBPaper00032425:down_in_lin-35
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037950:A-class-motor-neurons_larva_enriched
      WBPaper00037950:bodywall-muscle_larva_enriched
      WBPaper00037950:glr-1(+)-neurons_larva_enriched
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00040560:hpl-2_embryo_upregulated
      WBPaper00044260:1-methylnicotinamide_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045420:fertilization_upregulated_transcript
      WBPaper00046012:tdp-1(ok803)_upregulated
      WBPaper00048971:daf-16(mgDf50)_downregulated_L1
      WBPaper00048988:neuron_expressed
      WBPaper00050053:muscle_enriched_Day4
      WBPaper00050053:muscle_enriched_Day12
      WBPaper00050163:let-418(RNAi)_downregulated_100-cell-embryo
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050344:ASER-neuron_enriched
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00051352:Long-Term-Association-Memory_upregulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053302:alovudine_24h_regulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053321:PGCs_depleted_NuGen
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055565:AVK_enriched
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056290:hsp-6(mg585)_upregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00056826:hmc_biased
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058691:sin-3(tm1276)_downregulated
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00059421:daf-3(mgDf90)_downregulated
      WBPaper00059471:EGL-43_interacting
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059763:neuron_expressed
      WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
      WBPaper00060014:set-2(zr2012)_downregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:AIB
      WBPaper00061340:ALM_BDU
      WBPaper00061340:AVA
      WBPaper00061340:AVE
      WBPaper00061340:AVG
      WBPaper00061340:DA
      WBPaper00061340:DVC
      WBPaper00061340:hmc_homolog
      WBPaper00061340:I5
      WBPaper00061340:Intestinal_and_rectal_muscle
      WBPaper00061340:Neuroblast_ADE_ADA
      WBPaper00061340:Neuroblast_AIZ_FLP
      WBPaper00061340:OLL_parent
      WBPaper00061340:OLQ_parent
      WBPaper00061340:RME
      WBPaper00061340:RMED
      WBPaper00061340:SIA
      WBPaper00061340:SIB
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061527:cfz-2_18944-cfz-2_2268
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00062103:neuron_enriched
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062440:crh-1(n3315)_downregulated
      WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064532:pals-22(jy3)_upregulated
      WBPaper00064532:pals-25(icb98)_upregulated
      WBPaper00064532:pals-25(jy111)_upregulated
      WBPaper00065158:AFD_enriched
      WBPaper00065258:anchor-cell_enriched
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
      cgc4489_group_21
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00030839:Larval_A_Class
      WBPaper00030839:Larval_Pan_Neuronal
      WBPaper00031003:0hr_muscle_enriched
      WBPaper00031003:hlh_1_enriched
      WBPaper00031003:total_muscle_enriched
      WBPaper00031532:Larva_Pan_Neuronal_Enriched
      WBPaper00032165:differentially_expressed_with_age_medoid_2
      WBPaper00034757:up_by_oxidative_stress
      WBPaper00036286:Pattern_D
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00045673:colistin_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00055899:nitroguanidine_regulated
      WBPaper00057098:SiO2-nanoparticles_upregulated
    Interaction: WBInteraction000218171
      WBInteraction000218172
      WBInteraction000218173
      WBInteraction000218174
      WBInteraction000218175
      WBInteraction000250939
      WBInteraction000371729
      WBInteraction000383276
      WBInteraction000561539
  Map_info: Positive: Positive_clone: C54E10 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 18.0114
  Method: Gene