Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00008298

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00008298SMapS_parentSequenceC54D10
IdentityVersion1
NameSequence_nameC54D10.3
Molecular_nameC54D10.3
C54D10.3.1
CE05499
Other_nameCELE_C54D10.3Accession_evidenceNDBBX284605
Public_nameC54D10.3
DB_infoDatabaseAceViewgene5M899
WormQTLgeneWBGene00008298
WormFluxgeneWBGene00008298
NDBlocus_tagCELE_C54D10.3
PanthergeneCAEEL|WormBase=WBGene00008298|UniProtKB=Q18827
familyPTHR46219
NCBIgene179704
RefSeqproteinNM_073715.4
TREEFAMTREEFAM_IDTF318899
TrEMBLUniProtAccQ18827
UniProt_GCRPUniProtAccQ18827
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:48WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (26)
RNASeq_FPKM (74)
Ortholog (27)
Paralog (13)
Structured_descriptionAutomated_descriptionEnriched in OLL; PVD; RIBL; and RIBR based on tiling array and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by fifteen chemicals including Ethanol; rotenone; and mianserin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: ShK domain-like and ShKT domain.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC54D10.3
Corresponding_transcriptC54D10.3.1
Other_sequenceGE626322.1
Acan_isotig15610
Oden_isotig26141
CRC05477_1
CJC01778_1
CBC03796_1
Associated_featureWBsf232647
WBsf232648
Experimental_infoRNAi_resultWBRNAi00043136Inferred_automaticallyRNAi_primary
WBRNAi00030136Inferred_automaticallyRNAi_primary
Expr_patternExpr1021018
Expr1147108
Expr2001912
Expr2020136
Drives_constructWBCnstr00015937
WBCnstr00033074
Construct_productWBCnstr00033074
Microarray_results (22)
Expression_clusterWBPaper00032528:L3_enriched
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00035197:fer-1_upregulated
WBPaper00036291:ung-1_regulated
WBPaper00037055:DAF-16_binding_DNA
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00037950:PVD-OLL-neurons_larva_enriched
WBPaper00037950:PVD-OLL-neurons_larva_SelectivelyEnriched
WBPaper00038168:lin-15B(n744)_downregulated
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00041954:ethanol_upregulated
WBPaper00042215:wdr-23(tm1817)_upregulated
WBPaper00042561:smg-2(RNAi)_upregulated
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00044037:eat-2_upregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044656:tatn-1(qd182)_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00044743:wdr-23_neuron_upregulated
WBPaper00045314:S.aureus-induced_hlh-30(tm1978)
WBPaper00045316:prg-1_upregulated_L3
WBPaper00045521:Gender_Neutral
WBPaper00045571:germline-ablation_upregulated
WBPaper00045774:clk-1_upregulated
WBPaper00046805:csr-1(RNAi)_upregulated_Set1
WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
WBPaper00047131:daf-2(e1370)_upregulated_N2-background
WBPaper00047132:glp-1(ts)-25C_upregulated
WBPaper00048926:miaserin_upregulated_adult-day5
WBPaper00048988:neuron_expressed
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050903:mir-35-41(nDf50)_20C_upregulated
WBPaper00050903:mir-35-41(nDf50)_25C_upregulated
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00051265:F4_hrde-1(tm1200)_upregulated
WBPaper00051265:F4_morc-1(tm6048)_upregulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053094:adr-2(ok735)_neuron_upregulated
WBPaper00053154:human-amyloid-beta_tau_regulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:stavudine_72h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053810:isp-1(qm150)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00053814:15C_downregulated_PY79
WBPaper00054758:alg-1(gk204)_downregulated
WBPaper00055354:eat-2(ad1116)_upregulated
WBPaper00055354:Rapamycin-Allantoin_upregulated
WBPaper00055354:Rapamycin_upregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055648:nerve-ring_expressed
WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated
WBPaper00055971:nhl-2(ok818)_20C_downregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056139:soil-microbiota_upregulated
WBPaper00056617:adr-1_upregulated_embryo_transcript
WBPaper00056617:adr-2_upregulated_embryo_transcript
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057041:unc-70(cas983)_downregulated
WBPaper00057149:prgn-1(tm985)_upregulated
WBPaper00058948:npr-8(ok1439)_downregulated_OP50
WBPaper00058948:npr-8(ok1439)_downregulated_PA14
WBPaper00059117:B.subtilis_upregulated
WBPaper00059604:fluvastatin_upregulated_N2
WBPaper00059605:simr-1(cmp36)_upregulated
WBPaper00059728:20ug_cholesterol_upregulated
WBPaper00060084:cco-1(RNAi)_upregulated_lin-40(yth27)
WBPaper00060224:atf-6(ok551)_downregulated
WBPaper00060445:ikb-1(nr2027)_upregulated_L4
WBPaper00060445:nfki-1(cer1)_ikb-1(nr2027)_upregulated_L4
WBPaper00060445:nfki-1(cer1)_upregulated_L4
WBPaper00060634:fhod-1(tm2363)_upregulated
WBPaper00060661:sensory-neuron_depleted
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00061340:RIB
WBPaper00061341:28C_24h_upregulated
WBPaper00061439:unc-30(ok613)_upregulated
WBPaper00061466:nath-10(icb102)_downregulated
WBPaper00061479:mep-1(ne4629)_upregulated
WBPaper00061527:ttr-18-C54D10.3
WBPaper00061753:csr-1(tor159)_downregulated_25C
WBPaper00061753:csr-1(tor159)_upregulated_20C
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062520:qui-1(db104)_upregulated
WBPaper00064055:trl-1(cas1077)_downregulated_non-starved
WBPaper00064055:trl-1(cas1077)_downregulated_starved
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064156:lbp-3(overexpress)_upregulated
WBPaper00064156:lipl-4(overexpress)_upregulated
WBPaper00064721:fasn-1(g14)_downregulated_starved
WBPaper00064871:hypoxia_downregulated_F1
WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
WBPaper00065096:npr-8(ok1439)_downregulated_Day10_20C
WBPaper00065120:body-muscle-transcriptome
WBPaper00065258:anchor-cell_enriched
WBPaper00065623:99
WBPaper00065835:Day11_vs_Day1_downregulated
WBPaper00065841:78_0
WBPaper00065945:epidermis-rpoa-2(-)_downregulated_protein
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00065993:glp-1(e2141)_upregulated
cgc4386_cluster_2_4
cgc4489_group_18
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00029437:dcr-1_upregulated
WBPaper00030985:Erwinia_carotovora_downregulated
WBPaper00030985:Photorhabdus_luminescens_downregulated
WBPaper00031003:24hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00031060:2-deoxy-D-glucose_upregulated
WBPaper00031532:Larva_Pan_Neuronal_Depleted
WBPaper00032062:age_regulated_genes
WBPaper00032948:StarveUp3
WBPaper00035227:heat_shock_regulated
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00036123:Atrazine_regulated
WBPaper00036123:Cadmium_regulated
WBPaper00036286:Pattern_D
WBPaper00037695:WC_CC_6-day
WBPaper00039851:HK_C_albicans_vs_HK_OP50
WBPaper00039851:Live_C_albicans_vs_HK_OP50
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040858:eQTL_regulated_reproductive
WBPaper00041002:HQ_3d_2.0mM_Up
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041609:hpl-1_hpl-2_upregulated
WBPaper00042178:hlh-29(tm284)_upregulated
WBPaper00042274:tbx-2(bx59)_upregulated
WBPaper00047070:N2_starvation_upregulated
WBPaper00048989:N2_allantoin_downregulated
WBPaper00050520:lagr-1(gk327);hyl-1(ok976)_downregulated
WBPaper00053688:E.faecalis_downregulated
WBPaper00053688:E.faecium_downregulated
WBPaper00055435:MUA-AuNP-3_downregulated
WBPaper00056330:mrps-5(RNAi)_upregulated
[cgc5976]:class_1
[cgc6390]:Cluster_A
Interaction (153)
Map_infoPositivePositive_cloneC54D10Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionV4.19122
ReferenceWBPaper00041771
MethodGene