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WormBase Tree Display for Gene: WBGene00008035

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Name Class

WBGene00008035SMapS_parentSequenceC39E9
IdentityVersion1
NameSequence_nameC39E9.12
Molecular_nameC39E9.12
C39E9.12.1
CE39690
Other_nameCELE_C39E9.12Accession_evidenceNDBBX284604
Public_nameC39E9.12
DB_infoDatabaseAceViewgene4N859
WormQTLgeneWBGene00008035
WormFluxgeneWBGene00008035
NDBlocus_tagCELE_C39E9.12
NCBIgene178258
RefSeqproteinNM_070115.10
TrEMBLUniProtAccQ18546
UniProt_GCRPUniProtAccQ18546
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:48WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (26)
RNASeq_FPKM (74)
Contained_in_operonCEOP4528
Ortholog (22)
ParalogWBGene00012769Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00017620Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in several structures, including ABplapaaapa; ABplapppapp; ABprapaaapa; ciliated neurons; and germ line based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and glp-1 based on microarray; tiling array; RNA-seq; and proteomic studies. Is affected by fifteen chemicals including stavudine; Zidovudine; and Psoralens based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: SAP domain and SAP domain superfamily.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC39E9.12
Corresponding_CDS_historyC39E9.12:wp154
Corresponding_transcriptC39E9.12.1
Other_sequenceCJC18214_1
CR09383
CRC07866_1
CJC00842_1
CR09384
CGC00913_1
Associated_featureWBsf646510
WBsf998328
WBsf229384
Experimental_infoRNAi_resultWBRNAi00042217Inferred_automaticallyRNAi_primary
WBRNAi00007821Inferred_automaticallyRNAi_primary
WBRNAi00011787Inferred_automaticallyRNAi_primary
Expr_patternExpr1022928
Expr1033493
Expr1146208
Expr2001540
Expr2019761
Drives_constructWBCnstr00033288
Construct_productWBCnstr00033288
Microarray_results (19)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00032425:up_in_lin-35
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00040221:DAF-12_target_ALF4
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00044760:germline_specific
WBPaper00045521:Oogenic
WBPaper00045571:germline-ablation_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00046509:htz-1(ok3099)_upregulated
WBPaper00046509:lin-35(n745)_upregulated
WBPaper00047132:skn-1(RNAi)_downregulated_glp-1(ts)-dependent
WBPaper00048988:neuron_expressed
WBPaper00049498:npr-1(ur89)_regulated_6
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049905:Age_variant_expression
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050193:cec-4(ok3124)_downregulated_L1
WBPaper00050193:met-2(n4256)set-25(n5021)_downregulated_L1
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050522:mafr-1(tm6082)_downregulated
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00051039:germline_enriched
WBPaper00051265:F1_morc-1(tm6048)_downregulated
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053289:DREAM-target
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053388:dauer_regulated_Cluster6
WBPaper00053713:Starvation-induced_postdauer_vs_control_downregulated
WBPaper00055103:thoc-5(wy822)_downregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
WBPaper00055354:Rifampicin-Psora_downregulated
WBPaper00055648:germline_expressed
WBPaper00055827:daf-2(e1370)_downregulated
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056161:hermaphrodite_enriched_siRNA
WBPaper00056165:MINA-1_interacting_mRNA
WBPaper00056284:ints-5(RNAi)_downregulated
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00057041:spc-1(cas971)_upregulated
WBPaper00057154:HeatShock_downregulated_mRNA
WBPaper00057288:Cold_downregulated_transcript
WBPaper00058598:mex-3(eu149)_downregulated
WBPaper00058691:cfp-1(tm6369)_downregulated
WBPaper00058691:WDR-5.1_interacting_protein
WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
WBPaper00059664:srbc-48(ac23)_downregulated
WBPaper00060014:set-2(tm1630)_upregulated
WBPaper00060459:bcat-1(RNAi)_downregulated
WBPaper00060661:sensory-neuron_depleted
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00061007:HB101_downregulated
WBPaper00061007:S.aquatilis_downregulated
WBPaper00061045:Y56A3A.22(cck200)_downregulated
WBPaper00061274:hypergravity_15xg_upregulated
WBPaper00061274:microgravity_upregulated
WBPaper00061285:wounding_24h_upregulated
WBPaper00061340:ADA_ADE_grandparent
WBPaper00061340:Ciliated_non_amphid_neuron
WBPaper00061340:Neuroblast_AIZ_FLP
WBPaper00061340:Neuroblast_HSN_PHB
WBPaper00061340:Neuroblast_IL1_IL2
WBPaper00061340:PLM_ALN_grandparent
WBPaper00061340:PLM_ALN_great_grandparent
WBPaper00061527:pch-2-B0393.3
WBPaper00061699:daf-18(ok480)_upregulated
WBPaper00061753:csr-1(tor159)_downregulated_25C
WBPaper00062056:lin-35(n745)_upregulated
WBPaper00062056:lin-36(we36)_upregulated
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064107:lin-35(n745)_upregulated
WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
WBPaper00064716:paraquat_upregulated
WBPaper00064871:hypoxia_upregulated_F1
WBPaper00065096:25C_vs_20C_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065149:lin-52(n771)_upregulated
WBPaper00065373:Cisplatin_upregulated_WT
WBPaper00065373:sek-1(km4)_upregulated_cisplatin
WBPaper00065373:sek-1(km4)_upregulated_Ref
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066110:tetraploid_vs_diploid_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4489_group_1
WBPaper00005124:cholesterol_10-9M_regulated
WBPaper00025032:cluster_36
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026952:class_A
WBPaper00035905:FBF-1_Associated
WBPaper00036123:Fluoranthene_regulated
WBPaper00036130:mir-243_down_regulated
WBPaper00036286:Pattern_B
WBPaper00038060:SUMO-1_upregulated
WBPaper00038231:Cry5B_1.5-fold_downregulated
WBPaper00039866:ClassComp_daf-19_upregulated
WBPaper00040426:CYD-1_CDK-4_upregulated
WBPaper00040426:CYE-1_CDK-2AF_upregulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040963:TA300_down
WBPaper00041002:HF_11d_2.0mM_Up
WBPaper00041606:CE_B.thuringiensis-DB27_regulated
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00042128:gei-8(ok1671)_downregulated
WBPaper00042331:a-SWCNTs_downregulated
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00047070:N2_starvation_downregulated
WBPaper00048637:lin-35(n745)_starvation_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
WBPaper00053550:daf-19(m86)_upregulated_3-fold-embryo
WBPaper00057098:SiO2-nanoparticles_upregulated
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(23_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc6390]:Cluster_F
[cgc6390]:oogenesis-enriched
Interaction (102)
Map_infoPositivePositive_cloneC39E9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIV7.85328
MethodGene