WormBase Tree Display for Gene: WBGene00007728

WBGene00007728 SMap: S_parent: Sequence: C25F9
  Identity: Version: 1
    Name: Sequence_name: C25F9.9
      Molecular_name: C25F9.9
        C25F9.9.1
        CE43034
      Other_name: CELE_C25F9.9 Accession_evidence: NDB BX284605
      Public_name: C25F9.9
    DB_info: Database: AceView gene 5T891
        WormQTL gene WBGene00007728
        WormFlux gene WBGene00007728
        NDB locus_tag CELE_C25F9.9
        Panther gene CAEEL|WormBase=WBGene00007728|UniProtKB=O62073
          family PTHR21516
        NCBI gene 182908
        RefSeq protein NM_075378.4
        TrEMBL UniProtAcc O62073
        UniProt_GCRP UniProtAcc O62073
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:48 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (86)
    RNASeq_FPKM (74)
    Ortholog: chrV_pilon.g17889 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog (31)
    Structured_description: Automated_description: Enriched in intestine based on tiling array; RNA-seq; and microarray studies. Is affected by several genes including daf-2; daf-12; and eat-2 based on microarray and RNA-seq studies. Is affected by nine chemicals including tryptophan; Rifampin; and Sirolimus based on microarray; RNA-seq; and proteomic studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C25F9.9
    Corresponding_CDS_history: C25F9.9:wp194
    Corresponding_transcript: C25F9.9.1
    Associated_feature: WBsf233191
  Experimental_info: RNAi_result: WBRNAi00041206 Inferred_automatically: RNAi_primary
      WBRNAi00029201 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1027857
      Expr1145244
      Expr2001098
      Expr2019319
    Microarray_results (16)
    Expression_cluster: WBPaper00027339:daf-12(rh273)_downregulated
      WBPaper00031040:TGF-beta_adult_upregulated
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:intestine_larva_enriched
      WBPaper00037950:intestine_larva_SelectivelyEnriched
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00042194:Tryptophan_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044760:somatic_specific
      WBPaper00045390:ubc-9(RNAi)_upregulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045934:wrn-1(gk99)_downregulated
      WBPaper00049732:blmp-1(tm548)_vs_N2_downregulated
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00051039:intestine_enriched
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053388:dauer_regulated_Cluster6
      WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_downregulated
      WBPaper00053606:N2_vs_elt-2(ca15)_downregulated
      WBPaper00053810:isp-1(qm150)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00053909:N2_vs_CB4856_upregulated
      WBPaper00054410:set-26(tm2467)_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056290:hsp-6(mg585)_upregulated
      WBPaper00056809:smn-1(ok355)_downregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059194:klf-1(RNAi)_regulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059728:5ug_cholesterol_upregulated
      WBPaper00059839:S.maltophilia_regulated
      WBPaper00060014:set-2(zr2012)_downregulated
      WBPaper00060273:isp-1(qm150)_upregulated
      WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
      WBPaper00060445:ikb-1(nr2027)_downregulated_L4
      WBPaper00060764:swsn-1(os22ts)_upregulated
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061040:eat-2(ad1116)_upregulated
      WBPaper00061357:mett-10(ok2204)_downregulated_OP50
      WBPaper00061527:172183_at-176110_at
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062345:bortezomib_4h_downregulated_N2
      WBPaper00064005:starvation_downregulated_N2_mRNA
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064637:cox-5B(RNAi)_upregulated
      WBPaper00064716:paraquat_downregulated
      WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
      WBPaper00064992:Eugenol_downregulated
      WBPaper00064999:miR-229-64-65-66_downregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065749:endu-2(tm4977)_upregulated
      WBPaper00065841:13_1
      WBPaper00065984:pals-17(syb3980)_downregulated
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066232:ash-2(RNAi)_downregulated_WT
      WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
      WBPaper00026980:intestine_enriched
      WBPaper00030985:Erwinia_carotovora_downregulated
      WBPaper00034739:N2moreDR1350
      WBPaper00036286:Pattern_C
      WBPaper00038231:Cry5B_1.5-fold_downregulated
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00040858:eQTL_regulated_old
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00055899:nitroguanidine_regulated
      WBPaper00056330:mrps-5(RNAi)_upregulated
      [cgc6390]:Cluster_A
    Interaction: WBInteraction000345277
      WBInteraction000393859
  Map_info: Positive: Positive_clone: C25F9 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 21.7907
  Method: Gene