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WormBase Tree Display for Gene: WBGene00007707

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Name Class

WBGene00007707SMapS_parentSequenceC25A1
IdentityVersion2
NameCGC_namefath-1Person_evidenceWBPerson237
Sequence_nameC25A1.5
Molecular_nameC25A1.5
C25A1.5.1
CE08370
Other_nameCELE_C25A1.5Accession_evidenceNDBBX284601
Public_namefath-1
DB_infoDatabase (13)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:48WBPerson1971EventImportedInitial conversion from CDS class of WS125
216 Feb 2017 15:37:28WBPerson2970Name_changeCGC_namefath-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classfath
Allele (25)
StrainWBStrain00003441
RNASeq_FPKM (74)
GO_annotation (22)
Contained_in_operonCEOP1588
Ortholog (39)
Structured_descriptionAutomated_descriptionPredicted to enable fatty acid alpha-hydroxylase activity. Predicted to be involved in fatty acid metabolic process. Predicted to be located in endoplasmic reticulum. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 35. Is an ortholog of human FA2H (fatty acid 2-hydroxylase).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0110786Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:21197)
Molecular_infoCorresponding_CDSC25A1.5
Corresponding_transcriptC25A1.5.1
Other_sequence (34)
Associated_featureWBsf656848
WBsf984933
WBsf984934
WBsf984935
WBsf1010498
WBsf1010499
WBsf218400
WBsf218401
Experimental_infoRNAi_result (43)
Expr_patternChronogram376
Expr5333
Expr1022583
Expr1033336
Expr1145178
Expr2011441
Expr2029679
Drives_constructWBCnstr00003904
WBCnstr00033541
Construct_productWBCnstr00033541
Microarray_results (21)
Expression_clusterWBPaper00029359_1280
WBPaper00029359_1289
WBPaper00029359_1304
WBPaper00029359_1312
WBPaper00029359_1444
WBPaper00029359_1497
WBPaper00029359_1504
WBPaper00029359_1553
WBPaper00029359_1604
WBPaper00032097:CGH-1-associated-mRNA
WBPaper00037950:germline-precursors_embryo_enriched
WBPaper00037950:germline-precursors_embryo_SelectivelyEnriched
WBPaper00040221:DAF-12_target_ALF4
WBPaper00044030:nhr-8(hd117)_upregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00045417:128Q-huntingtin_downreglated
WBPaper00045521:Oogenic
WBPaper00045729:gld-2(RNAi)_downregulated
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049942:HeatShock_downregulated_hsf-1(+)
WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:body-muscle_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:pharynx_expressed
WBPaper00051039:germline_enriched
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051404:alg-1(gk214)_downregulated
WBPaper00051404:alg-2(ok304)_downregulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053321:PGCs_enriched_NuGen
WBPaper00053388:dauer_regulated_Cluster5
WBPaper00053599:female_vs_male_upregulated
WBPaper00055354:Metformin_downregulated
WBPaper00055354:Rapamycin_upregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055648:germline_expressed
WBPaper00055897:heat-shock_downregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056619:CEPsh_enriched
WBPaper00056826:hmc_biased
WBPaper00057288:Cold_upregulated_transcript
WBPaper00057288:iff-1(RNAi)_upregulated_transcript
WBPaper00058598:sin-3(tm1276)_upregulated
WBPaper00058691:cfp-1(tm6369)_upregulated
WBPaper00058691:sin-3(tm1276)_upregulated
WBPaper00059174:MEG-3_interacting
WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
WBPaper00059471:EGL-43_interacting
WBPaper00059567:olrn-1(ums9)_regulated
WBPaper00060661:sensory-neuron_depleted
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00061007:HB101_downregulated
WBPaper00061203:sin-3(tm1276)_downregulated
WBPaper00061340:mu_int_mu_anal
WBPaper00061340:mu_sph
WBPaper00061527:trcs-2_5724-R11A8.7_17645
WBPaper00061530:nhr-49(e2144)_upregulated
WBPaper00061651:Rectal_gland_enriched
WBPaper00061902:camt-1(ok515)_regulated_RMG
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062456:doxycycline_upregulated_CB4856_protein
WBPaper00062554:MAGU-2_interacting
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064716:paraquat_upregulated
WBPaper00064871:hypoxia_upregulated_F1
WBPaper00064952:Day10_vs_L4_downregulated_25C
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065120:body-muscle-transcriptome
WBPaper00065373:Cisplatin_downregulated_WT
WBPaper00065373:sek-1(km4)_downregulated_cisplatin
WBPaper00065841:9_1
WBPaper00065841:9_2
WBPaper00065975:P-body_vs_oocyte_enriched
WBPaper00065975:P-body_vs_WholeAnimal_enriched
cgc4386_cluster_4_3
cgc4489_group_4
WBPaper00005124:estrogen_10-5M_regulated
WBPaper00025032:cluster_1
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00031832:slr-2_regulated
WBPaper00034739:N2moreDR1350
WBPaper00035084:L1_enriched_AIN-2_IP
WBPaper00035504:daf-2(e1370)_upregulated
WBPaper00035588:alg-1(-)_upregulated
WBPaper00035905:FBF-1_Associated
WBPaper00036286:Pattern_F
WBPaper00037113:Chlorpyrifos_Diazinon_16C_regulated
WBPaper00037147:heatshock_upregulated
WBPaper00037611:GLD-2-associated
WBPaper00037611:RNP-8-associated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00041606:CE_B.thuringiensis-DB27_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00047070:N2_UV_downregulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00053827:pyoverdine_upregulated
[cgc5767]:cluster_1
[cgc5767]:expression_class_E
[cgc5767]:expression_class_ET
[cgc5767]:expression_class_E_pi(23_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc5767]:expression_class_MET
[cgc6390]:Cluster_E
[cgc6390]:intrinsic
[cgc6390]:mixed_oogenesis-somatic
Interaction (51)
Map_infoMapIPosition4.71837
PositivePositive_cloneC25A1Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00026800
WBPaper00029211
WBPaper00031949
WBPaper00032961
WBPaper00038491
WBPaper00040204
WBPaper00042257
WBPaper00055090
WBPaper00055161
WBPaper00061997
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene