WormBase Tree Display for Gene: WBGene00007687
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| WBGene00007687 | SMap | S_parent | Sequence | C18E9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | C18E9.7 | |||||||
| Molecular_name | C18E9.7 | ||||||||
| C18E9.7.1 | |||||||||
| CE52583 | |||||||||
| Other_name | CELE_C18E9.7 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | C18E9.7 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (46) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (30) | |||||||||
| Paralog | WBGene00002915 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00011326 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00017013 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00020516 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enriched in arcade cell; excretory gland cell; pharyngeal muscle cell; and sensory neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by sixteen chemicals including 1-methylnicotinamide; D-glucose; and stavudine based on RNA-seq and microarray studies. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome and vesicoureteral reflux. Human TNXB enables collagen fibril binding activity. Is predicted to encode a protein with the following domains: Fibronectin type III superfamily; TM proximal of protein tyrosine phosphatase, receptor type J; PTPRJ, transmembrane domain; Fibronectin type III; Immunoglobulin-like fold; and Fibronectin type III domain. Is an ortholog of human TNXA (tenascin XA (pseudogene)) and TNXB (tenascin XB). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:9620 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11976) | ||||
| DOID:13359 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11976) | ||||||
| Molecular_info | Corresponding_CDS | C18E9.7 | |||||||
| Corresponding_CDS_history | C18E9.7:wp263 | ||||||||
| Corresponding_transcript | C18E9.7.1 | ||||||||
| Other_sequence | AS08763 | ||||||||
| ACC05160_1 | |||||||||
| MHC09111_1 | |||||||||
| ACC34413_1 | |||||||||
| MH10960 | |||||||||
| ASC04679_1 | |||||||||
| FC551183.1 | |||||||||
| FC551769.1 | |||||||||
| JI212309.1 | |||||||||
| Acan_isotig14345 | |||||||||
| Associated_feature | WBsf665870 | ||||||||
| WBsf665871 | |||||||||
| WBsf717750 | |||||||||
| WBsf988890 | |||||||||
| WBsf988891 | |||||||||
| WBsf1012779 | |||||||||
| WBsf1012780 | |||||||||
| WBsf223579 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00011009 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00081689 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00040956 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1016580 | ||||||||
| Expr1033322 | |||||||||
| Expr1144999 | |||||||||
| Expr2000984 | |||||||||
| Expr2019203 | |||||||||
| Drives_construct | WBCnstr00033554 | ||||||||
| Construct_product | WBCnstr00033554 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (184) | |||||||||
| Interaction (56) | |||||||||
| Map_info | Positive | Positive_clone | C18E9 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | II | 0.946824 | |||||||
| Reference | WBPaper00053423 | ||||||||
| Method | Gene |
