WormBase Tree Display for Gene: WBGene00007687
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WBGene00007687 | SMap | S_parent | Sequence | C18E9 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | Sequence_name | C18E9.7 | |||||||
Molecular_name | C18E9.7 | ||||||||
C18E9.7.1 | |||||||||
CE52583 | |||||||||
Other_name | CELE_C18E9.7 | Accession_evidence | NDB | BX284602 | |||||
Public_name | C18E9.7 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Allele (46) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (30) | |||||||||
Paralog | WBGene00002915 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
WBGene00011326 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00017013 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00020516 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Automated_description | Enriched in arcade cell; excretory gland cell; pharyngeal muscle cell; and sensory neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by sixteen chemicals including 1-methylnicotinamide; D-glucose; and stavudine based on RNA-seq and microarray studies. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome and vesicoureteral reflux. Human TNXB enables collagen fibril binding activity. Is predicted to encode a protein with the following domains: Fibronectin type III superfamily; TM proximal of protein tyrosine phosphatase, receptor type J; PTPRJ, transmembrane domain; Fibronectin type III; Immunoglobulin-like fold; and Fibronectin type III domain. Is an ortholog of human TNXA (tenascin XA (pseudogene)) and TNXB (tenascin XB). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed (2) | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:9620 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11976) | ||||
DOID:13359 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11976) | ||||||
Molecular_info | Corresponding_CDS | C18E9.7 | |||||||
Corresponding_CDS_history | C18E9.7:wp263 | ||||||||
Corresponding_transcript | C18E9.7.1 | ||||||||
Other_sequence | AS08763 | ||||||||
ACC05160_1 | |||||||||
MHC09111_1 | |||||||||
ACC34413_1 | |||||||||
MH10960 | |||||||||
ASC04679_1 | |||||||||
FC551183.1 | |||||||||
FC551769.1 | |||||||||
JI212309.1 | |||||||||
Acan_isotig14345 | |||||||||
Associated_feature | WBsf665870 | ||||||||
WBsf665871 | |||||||||
WBsf717750 | |||||||||
WBsf988890 | |||||||||
WBsf988891 | |||||||||
WBsf1012779 | |||||||||
WBsf1012780 | |||||||||
WBsf223579 | |||||||||
Experimental_info | RNAi_result | WBRNAi00011009 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00081689 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00040956 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1016580 | ||||||||
Expr1033322 | |||||||||
Expr1144999 | |||||||||
Expr2000984 | |||||||||
Expr2019203 | |||||||||
Drives_construct | WBCnstr00033554 | ||||||||
Construct_product | WBCnstr00033554 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (184) | |||||||||
Interaction (56) | |||||||||
Map_info | Positive | Positive_clone | C18E9 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | II | 0.946824 | |||||||
Reference | WBPaper00053423 | ||||||||
Method | Gene |