WormBase Tree Display for Gene: WBGene00007403
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| WBGene00007403 | SMap | S_parent | Sequence | C07A9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | set-3 | Person_evidence | WBPerson1730 | |||||
| WBPerson268 | |||||||||
| WBPerson632 | |||||||||
| Sequence_name | C07A9.7 | ||||||||
| Molecular_name | C07A9.7a | ||||||||
| C07A9.7a.1 | |||||||||
| CE00498 | |||||||||
| C07A9.7b | |||||||||
| CE31769 | |||||||||
| C07A9.7b.1 | |||||||||
| Other_name | CELE_C07A9.7 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | set-3 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 03 May 2007 10:33:07 | WBPerson2970 | Name_change | CGC_name | set-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | set | ||||||||
| Allele (38) | |||||||||
| Strain | WBStrain00036744 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00041589 | ||||||||
| 00041590 | |||||||||
| 00041591 | |||||||||
| Contained_in_operon | CEOP3612 | ||||||||
| Ortholog (30) | |||||||||
| Paralog | WBGene00009370 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00011068 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00022499 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00044070 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | set-3 encodes, by alternative splicing, two alternative isoforms of a SET domain-containing protein; SET-3 is orthologous to human SMYD4; neither set-3(n4948) nor set-3(RNAi) have any obvious phenotypes. | Paper_evidence | WBPaper00030864 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 11 Oct 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable methyltransferase activity. Predicted to be involved in methylation. Expressed in AB; Psub1; hypodermis; and intestine. Is an ortholog of human SMYD4 (SET and MYND domain containing 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C07A9.7a | |||||||
| C07A9.7b | |||||||||
| Corresponding_CDS_history | C07A9.7:wp85 | ||||||||
| Corresponding_transcript | C07A9.7a.1 | ||||||||
| C07A9.7b.1 | |||||||||
| Other_sequence | CBC14341_1 | ||||||||
| CBC09680_1 | |||||||||
| Associated_feature | WBsf1015652 | ||||||||
| WBsf1015653 | |||||||||
| WBsf227348 | |||||||||
| WBsf227349 | |||||||||
| WBsf227350 | |||||||||
| WBsf227351 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00006400 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00113445 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00091506 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00039980 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00072917 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00010368 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028620 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr14358 | ||||||||
| Expr14405 | |||||||||
| Expr1026361 | |||||||||
| Expr1033188 | |||||||||
| Expr1144058 | |||||||||
| Expr2015779 | |||||||||
| Expr2034012 | |||||||||
| Drives_construct | WBCnstr00033767 | ||||||||
| Construct_product | WBCnstr00033767 | ||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (98) | |||||||||
| Interaction (92) | |||||||||
| Map_info | Map | III | Position | 0.885193 | Error | 0.008764 | |||
| Positive | Positive_clone | C07A9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00030864 | ||||||||
| WBPaper00036383 | |||||||||
| WBPaper00038372 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
