WormBase Tree Display for Gene: WBGene00007403

WBGene00007403 SMap: S_parent: Sequence: C07A9
  Identity: Version: 2
    Name: CGC_name: set-3 Person_evidence: WBPerson1730
            WBPerson268
            WBPerson632
      Sequence_name: C07A9.7
      Molecular_name: C07A9.7a
        C07A9.7a.1
        CE00498
        C07A9.7b
        CE31769
        C07A9.7b.1
      Other_name: CELE_C07A9.7 Accession_evidence: NDB BX284603
      Public_name: set-3
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:48 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 03 May 2007 10:33:07 WBPerson2970 Name_change: CGC_name: set-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: set
    Allele (38)
    Strain: WBStrain00036744
    RNASeq_FPKM (74)
    GO_annotation: 00041589
      00041590
      00041591
    Contained_in_operon: CEOP3612
    Ortholog (30)
    Paralog: WBGene00009370 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00011068 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00022499 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00044070 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: set-3 encodes, by alternative splicing, two alternative isoforms of a SET domain-containing protein; SET-3 is orthologous to human SMYD4; neither set-3(n4948) nor set-3(RNAi) have any obvious phenotypes. Paper_evidence: WBPaper00030864
          Curator_confirmed: WBPerson567
          Date_last_updated: 11 Oct 2007 00:00:00
      Automated_description: Predicted to enable methyltransferase activity. Predicted to be involved in methylation. Expressed in AB; Psub1; hypodermis; and intestine. Is an ortholog of human SMYD4 (SET and MYND domain containing 4). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C07A9.7a
      C07A9.7b
    Corresponding_CDS_history: C07A9.7:wp85
    Corresponding_transcript: C07A9.7a.1
      C07A9.7b.1
    Other_sequence: CBC14341_1
      CBC09680_1
    Associated_feature: WBsf1015652
      WBsf1015653
      WBsf227348
      WBsf227349
      WBsf227350
      WBsf227351
  Experimental_info: RNAi_result: WBRNAi00006400 Inferred_automatically: RNAi_primary
      WBRNAi00113445 Inferred_automatically: RNAi_primary
      WBRNAi00091506 Inferred_automatically: RNAi_primary
      WBRNAi00039980 Inferred_automatically: RNAi_primary
      WBRNAi00072917 Inferred_automatically: RNAi_primary
      WBRNAi00010368 Inferred_automatically: RNAi_primary
      WBRNAi00028620 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr14358
      Expr14405
      Expr1026361
      Expr1033188
      Expr1144058
      Expr2015779
      Expr2034012
    Drives_construct: WBCnstr00033767
    Construct_product: WBCnstr00033767
    Microarray_results (25)
    Expression_cluster (98)
    Interaction: WBInteraction000151572
      WBInteraction000179712
      WBInteraction000185016
      WBInteraction000191549
      WBInteraction000194885
      WBInteraction000207457
      WBInteraction000212123
      WBInteraction000213272
      WBInteraction000215746
      WBInteraction000216246
      WBInteraction000216248
      WBInteraction000217154
      WBInteraction000221836
      WBInteraction000224750
      WBInteraction000224801
      WBInteraction000236344
      WBInteraction000239166
      WBInteraction000239430
      WBInteraction000256271
      WBInteraction000264187
      WBInteraction000266218
      WBInteraction000268100
      WBInteraction000275796
      WBInteraction000277550
      WBInteraction000278045
      WBInteraction000286574
      WBInteraction000287613
      WBInteraction000287772
      WBInteraction000289117
      WBInteraction000289271
      WBInteraction000289801
      WBInteraction000293492
      WBInteraction000293591
      WBInteraction000295417
      WBInteraction000297264
      WBInteraction000298265
      WBInteraction000299504
      WBInteraction000307741
      WBInteraction000308685
      WBInteraction000309914
      WBInteraction000314327
      WBInteraction000314644
      WBInteraction000316422
      WBInteraction000325769
      WBInteraction000326833
      WBInteraction000329163
      WBInteraction000329881
      WBInteraction000330987
      WBInteraction000331579
      WBInteraction000334666
      WBInteraction000336536
      WBInteraction000337486
      WBInteraction000338122
      WBInteraction000338454
      WBInteraction000342192
      WBInteraction000346488
      WBInteraction000347606
      WBInteraction000350084
      WBInteraction000355116
      WBInteraction000357973
      WBInteraction000358393
      WBInteraction000366475
      WBInteraction000367126
      WBInteraction000370115
      WBInteraction000372257
      WBInteraction000373091
      WBInteraction000379765
      WBInteraction000382414
      WBInteraction000382549
      WBInteraction000389211
      WBInteraction000390740
      WBInteraction000391291
      WBInteraction000392890
      WBInteraction000396380
      WBInteraction000400618
      WBInteraction000406439
      WBInteraction000406642
      WBInteraction000407088
      WBInteraction000416205
      WBInteraction000418209
      WBInteraction000419093
      WBInteraction000425705
      WBInteraction000429992
      WBInteraction000437368
      WBInteraction000437492
      WBInteraction000438013
      WBInteraction000440302
      WBInteraction000441257
      WBInteraction000446342
      WBInteraction000455494
      WBInteraction000547199
      WBInteraction000579414
  Map_info: Map: III Position: 0.885193 Error: 0.008764
    Positive: Positive_clone: C07A9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00030864
    WBPaper00036383
    WBPaper00038372
    WBPaper00065308
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene