WormBase Tree Display for Gene: WBGene00007231

WBGene00007231 SMap: S_parent: Sequence: C01G10
  Identity: Version: 2
    Name: Sequence_name: C01G10.4
      Molecular_name: C01G10.4
        C01G10.4.1
        CE39213
      Other_name: CELE_C01G10.4 Accession_evidence: NDB BX284605
      Public_name: C01G10.4
    DB_info: Database: AceView gene 5P571
        WormQTL gene WBGene00007231
        WormFlux gene WBGene00007231
        NDB locus_tag CELE_C01G10.4
        NCBI gene 182081
        RefSeq protein NM_074318.4
        TrEMBL UniProtAcc Q93164
        UniProt_GCRP UniProtAcc Q93164
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:47 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 07 Nov 2005 17:03:31 WBPerson1983 Event: Split_into: WBGene00044658
      Split_into: WBGene00044658
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar01071623
      WBVar01499705
      WBVar01500212
      WBVar01500213
      WBVar01499299
      WBVar01499316
      WBVar01499698
    RNASeq_FPKM (74)
    Ortholog: WBGene00032672 Caenorhabditis briggsae From_analysis: OMA
      WBGene00070393 Caenorhabditis remanei From_analysis: OMA
      WBGene00123252 Caenorhabditis japonica From_analysis: OMA
      WBGene00155353 Caenorhabditis brenneri From_analysis: OMA
      WBGene00158480 Caenorhabditis brenneri From_analysis: OMA
      WBGene00111029 Pristionchus pacificus From_analysis: OMA
      chrV_pilon.g16696 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog: WBGene00044658 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in accessory cell and male-specific anatomical entity based on single-cell RNA-seq and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by twenty chemicals including methylmercuric chloride; Mercuric Chloride; and Tunicamycin based on microarray and RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C01G10.4
    Corresponding_CDS_history: C01G10.4:wp151
    Corresponding_transcript: C01G10.4.1
  Experimental_info: RNAi_result: WBRNAi00039329 Inferred_automatically: RNAi_primary
      WBRNAi00009932 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1018402
      Expr1143442
      Expr2000293
      Expr2018516
    Drives_construct: WBCnstr00033901
    Construct_product: WBCnstr00033901
    Microarray_results (15)
    Expression_cluster: WBPaper00032425:down_in_zfp-1
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037624:ets-4(ok165)_upregulated
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00042215:wdr-23(tm1817)_upregulated
      WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
      WBPaper00044030:nhr-8(hd117)_upregulated
      WBPaper00044316:CH3HgCl_7.5uM_upregulated
      WBPaper00044316:HgCl2_20uM_upregulated
      WBPaper00044736:oscillating_dev_expression
      WBPaper00044743:wdr-23_neuron_upregulated
      WBPaper00045017:blmp-1(tm548)_upregulated
      WBPaper00045314:S.aureus-induced_hlh-30(tm1978)
      WBPaper00045390:tunicamycin_upregulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045774:clk-1_downregulated
      WBPaper00045971:tunicamycin_upregulated_RtcB(null)
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
      WBPaper00049498:npr-1(ur89)_regulated_7
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
      WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
      WBPaper00049920:hyl-2(tm2031)_upregulated
      WBPaper00049954:BPA_upregulated
      WBPaper00050193:cec-4(ok3124)_upregulated_L1
      WBPaper00050193:dpy-27(RNAi)_upregulated_L1
      WBPaper00050332:daf-16(RNAi)_downregulated
      WBPaper00050332:juglone_upregulated
      WBPaper00050332:skn-1(RNAi)_downregulated
      WBPaper00050561:indole_10-fold_upregulated
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00051404:alg-1(gk214)_upregulated
      WBPaper00051404:alg-2(ok304)_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053318:mir-71(n4115)_upregulated_mRNA
      WBPaper00053368:F.oxysporum_regulated
      WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15);elt-7(tm840)_upregulated
      WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
      WBPaper00053771:down_by_skn-1(RNAi)_at_24h-NaCl
      WBPaper00054410:set-9(rw5)_upregulated
      WBPaper00054410:set-26(tm2467)_upregulated
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00055013:hmg-4(RNAi)_upregulated
      WBPaper00055013:spt-16(RNAi)_upregulated
      WBPaper00055354:Rapamycin-Allantoin_upregulated
      WBPaper00055354:Rapamycin_upregulated
      WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated
      WBPaper00056139:soil-microbiota_downregulated
      WBPaper00056167:Cry5B_downregulated
      WBPaper00056169:rrf-3(pk1426)_downregulated_L1
      WBPaper00056169:rrf-3(pk1426)_downregulated_L2
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00057265:metaformin_downregulated_OP50
      WBPaper00057265:metaformin_downregulated_OP50-MR
      WBPaper00058665:graphene-oxide_upregulated_mRNA
      WBPaper00058725:sftb-1(cer6)_upregulated
      WBPaper00058725:sftb-1(cer39)_upregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059378:lmn-1(Y59C)_upregulated
      WBPaper00059421:daf-3(mgDf90)_upregulated
      WBPaper00059527:lsm-1_upregulated_L1
      WBPaper00059728:5ug_cholesterol_upregulated
      WBPaper00059739:hira-1(gk835598)_upregulated_adult
      WBPaper00059739:hira-1(gk835598)_upregulated_L4
      WBPaper00059754:P.aeruginosa_PA14_upregulated
      WBPaper00059824:rnp-6(dh1127)_regulated_OP50
      WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
      WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060434:pH4.33_vs_pH6.33_uprgulated
      WBPaper00060683:hlh-11(overexpression)_upregulated
      WBPaper00060764:swsn-9(ok1354)_upregulated
      WBPaper00061274:hypergravity_15xg_downregulated
      WBPaper00061340:Glia
      WBPaper00061390:N2_ascarosides_downregulated
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061590:CGP37157_upregulated
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062347:blmp-1(tm548)_upregulated
      WBPaper00062354:H.zoospora_6h_regulated
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00062491:sma-3(wk30)_upregulated
      WBPaper00064122:vulva_transcriptome
      WBPaper00064156:lbp-3(overexpress)_upregulated
      WBPaper00064156:lipl-4(overexpress)_upregulated
      WBPaper00064291:antimycin_upregulated
      WBPaper00064505:tamoxifen_upregulated
      WBPaper00064661:lpd-3(ok2138)_upregulated
      WBPaper00064769:him-17(me24)_upregulated
      WBPaper00065029:cadmium_upregulated
      WBPaper00065096:npr-8(ok1439)_upregulated_Day10_20C
      WBPaper00065096:npr-8(ok1439)_upregulated_Day10_25C
      WBPaper00065272:dhgd-1(tm6671)_upregulated
      WBPaper00065288:mdt-15(tm2182)_downregulated
      WBPaper00065746:eat-2(ad1113)_upregulated
      WBPaper00065841:9_0
      WBPaper00065841:9_1
      WBPaper00065841:9_2
      WBPaper00065841:15_0
      WBPaper00065841:26_1
      WBPaper00065877:rege-1(imm070)_upregulated_PA14
      WBPaper00065926:pgph-2(overepxreesion)_upregulated_glucose
      WBPaper00065995:M.humicola-extract_upregulated_old-1(ok1273)
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00066110:Cisplatin_upregulated_tetraploid
      WBPaper00066110:Doxorubicin_upregulated_tetraploid
      WBPaper00066204:CdCl2_upregulated_mRNA
      WBPaper00066232:ash-2(RNAi)_downregulated_WT
      WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
      cgc4489_group_21
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026629:L2_male_enriched
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00032062:age_regulated_genes
      WBPaper00035084:L1_enriched_AIN-2_IP
      WBPaper00036286:Pattern_G
      WBPaper00036383:ash-2_Day8_regulated
      WBPaper00037695:CC_3-day
      WBPaper00038172:crh-1null_up_regulated
      WBPaper00038172:tax-6null_up_regulated
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00042128:gei-8(ok1671)_upregulated
      WBPaper00044091:Bpseudomallei_induced_8h
      WBPaper00044091:Bpseudomallei_induced_12h
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00046853:AOBr_LakeStobenseeAug_upregulated
      WBPaper00046853:AOBr_M.aeruginosa-batch-culture_downregulated
      WBPaper00047070:N2_UV_upregulated
      WBPaper00047070:xpa-1_UV_upregulated
      WBPaper00048989:N2_rapamycin_upregulated
      WBPaper00050515:nipi-3(fr4)_upregulated
      WBPaper00050520:lagr-1(gk327);hyl-1(ok976)_upregulated
      WBPaper00056330:mrps-5(RNAi)_upregulated
      WBPaper00057098:SiO2-nanoparticles_downregulated
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
    Interaction: WBInteraction000192664
      WBInteraction000222799
      WBInteraction000245014
      WBInteraction000274647
      WBInteraction000312280
      WBInteraction000327131
  Map_info: Positive: Positive_clone: C01G10 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 7.34565
  Method: Gene