WormBase Tree Display for Gene: WBGene00007132
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| WBGene00007132 | SMap | S_parent | Sequence | B0284 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | pals-27 | Person_evidence | WBPerson260 | |||||
| Sequence_name | B0284.2 | ||||||||
| Molecular_name | B0284.2 | ||||||||
| WP:CE00651 | |||||||||
| CE00651 | |||||||||
| B0284.2.1 | |||||||||
| Other_name | CELE_B0284.2 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | pals-27 | ||||||||
| DB_info | Database | AceView | gene | 3F473 | |||||
| WormQTL | gene | WBGene00007132 | |||||||
| WormFlux | gene | WBGene00007132 | |||||||
| NDB | locus_tag | CELE_B0284.2 | |||||||
| NCBI | gene | 175567 | |||||||
| RefSeq | mRNA | NM_065483.5 | |||||||
| protein | NP_497884.1 | ||||||||
| NM_065483.8 | |||||||||
| TREEFAM | TREEFAM_ID | TF322628 | |||||||
| UniProt | UniProtAcc | Q17469 | |||||||
| TrEMBL | UniProtAcc | Q17469 | |||||||
| UniProt_GCRP | UniProtAcc | Q17469 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:47 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 26 Oct 2016 09:42:35 | WBPerson2970 | Name_change | CGC_name | pals-27 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pals | ||||||||
| Allele | WBVar02152545 | ||||||||
| WBVar02131878 | |||||||||
| WBVar01994987 | |||||||||
| WBVar02069588 | |||||||||
| WBVar00313072 | |||||||||
| WBVar00821494 | |||||||||
| WBVar00308934 | |||||||||
| WBVar00821495 | |||||||||
| WBVar01262993 | |||||||||
| WBVar00821496 | |||||||||
| WBVar01262994 | |||||||||
| WBVar00821497 | |||||||||
| WBVar00821498 | |||||||||
| WBVar00821499 | |||||||||
| WBVar00821500 | |||||||||
| WBVar00821501 | |||||||||
| WBVar00821502 | |||||||||
| WBVar00821503 | |||||||||
| WBVar00821504 | |||||||||
| WBVar00821505 | |||||||||
| WBVar00300954 | |||||||||
| WBVar00305346 | |||||||||
| WBVar00256481 | |||||||||
| WBVar01893218 | |||||||||
| WBVar00315653 | |||||||||
| WBVar01445280 | |||||||||
| WBVar01445281 | |||||||||
| WBVar00395904 | |||||||||
| WBVar01445282 | |||||||||
| WBVar01445285 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00028845 | Caenorhabditis briggsae | From_analysis | WormBase-Compara | |||||
| CSP26.g3004 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
| CSP26.g3005 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
| CSP40.g1855 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
| Cnig_chr_V.g18005 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
| Cnig_chr_V.g18455 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
| Csp5_scaffold_00680.g14347 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
| GCK72_019033 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
| Sp34_30075900 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
| chrIII_pilon.g7436 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog | WBGene00007131 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00007134 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| WBGene00007657 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00007659 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00007660 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00012505 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enriched in several structures, including ABplapaaap; excretory cell; head mesodermal cell; male distal tip cell; and somatic gonad precursor based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by thirteen chemicals including Sodium Chloride; Psoralens; and allantoin based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0284.2 | |||||||
| Corresponding_transcript | B0284.2.1 | ||||||||
| Associated_feature | WBsf992106 | ||||||||
| WBsf992107 | |||||||||
| WBsf224725 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00002068 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00005126 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00038865 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00115944 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00009662 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00070091 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1143056 | ||||||||
| Expr2014700 | |||||||||
| Expr2032935 | |||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (241) | |||||||||
| Interaction | WBInteraction000288925 | ||||||||
| WBInteraction000342580 | |||||||||
| Map_info | Map | III | Position | -3.1784 | |||||
| Positive | Positive_clone | B0284 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00061319 | ||||||||
| WBPaper00062345 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
