WormBase Tree Display for Gene: WBGene00006965

WBGene00006965 SMap: S_parent: Sequence: F54F7
  Identity: Version: 2
    Name: CGC_name: xtr-1 Person_evidence: WBPerson349
      Sequence_name: F54F7.4
      Molecular_name: F54F7.4
        F54F7.4.1
        CE51247
      Other_name: CELE_F54F7.4 Accession_evidence: NDB BX284606
      Public_name: xtr-1
    DB_info: Database: AceView gene XM471
        WormQTL gene WBGene00006965
        WormFlux gene WBGene00006965
        NDB locus_tag CELE_F54F7.4
        Panther gene CAEEL|WormBase=WBGene00006965|UniProtKB=Q20791
          family PTHR39365
        NCBI gene 192057
        RefSeq protein NM_001322634.2
        TrEMBL UniProtAcc Q20791
        UniProt_GCRP UniProtAcc Q20791
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:44 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 18 Feb 2016 15:17:05 WBPerson1983 Event: Split_into: WBGene00269392
      Split_into: WBGene00269392
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: xtr
    Allele (25)
    Legacy_information: [Kuwabara PE] No mutants known. Sequence similarity to C-terminal regulatory region of TRA-2. Predicted gene F54F7.4
    RNASeq_FPKM (74)
    GO_annotation: 00069145
      00069146
      00069147
      00115140
      00115141
      00115142
    Ortholog (13)
    Paralog: WBGene00006605 Caenorhabditis elegans From_analysis: Panther
      WBGene00044213 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Concise_description: xtr-1 encodes a protein with similarity to TRA-2A and TRA-2B in a region known as the MX region, hypothesized to be a protein-protein interaction domain involved in negatively regulating tra-2 activity in the germ line. Paper_evidence: WBPaper00003323
          Curator_confirmed: WBPerson48
          Date_last_updated: 31 Mar 2005 00:00:00
      Automated_description: Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in germ-line sex determination. Predicted to be located in plasma membrane. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F54F7.4
    Corresponding_CDS_history: F54F7.4:wp252
    Corresponding_transcript: F54F7.4.1
    Other_sequence: CRC10370_1
      CR05644
  Experimental_info: RNAi_result: WBRNAi00048381 Inferred_automatically: RNAi_primary
      WBRNAi00015661 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1028828
      Expr1152171
      Expr2018112
      Expr2036250
    Drives_construct: WBCnstr00034065
    Construct_product: WBCnstr00034065
    Microarray_results (16)
    Expression_cluster (145)
  Map_info: Map: X Position: 6.73782
    Positive: Positive_clone: F54F7 Author_evidence: Kuwabara PE
          Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00003323
  Remark: Following advice from [Hodgkin J], the trx gene class was renamed to xtr. Hence this gene used to be called trx-1. [krb 020614]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene