WormBase Tree Display for Gene: WBGene00006965
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WBGene00006965 | SMap | S_parent | Sequence | F54F7 | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | xtr | |||||
Allele (25) | ||||||
Legacy_information | [Kuwabara PE] No mutants known. Sequence similarity to C-terminal regulatory region of TRA-2. Predicted gene F54F7.4 | |||||
RNASeq_FPKM (74) | ||||||
GO_annotation | 00069145 | |||||
00069146 | ||||||
00069147 | ||||||
00115140 | ||||||
00115141 | ||||||
00115142 | ||||||
Ortholog (13) | ||||||
Paralog | WBGene00006605 | Caenorhabditis elegans | From_analysis | Panther | ||
WBGene00044213 | Caenorhabditis elegans | From_analysis | Panther | |||
Structured_description | Concise_description | xtr-1 encodes a protein with similarity to TRA-2A and TRA-2B in a region known as the MX region, hypothesized to be a protein-protein interaction domain involved in negatively regulating tra-2 activity in the germ line. | Paper_evidence | WBPaper00003323 | ||
Curator_confirmed | WBPerson48 | |||||
Date_last_updated | 31 Mar 2005 00:00:00 | |||||
Automated_description | Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in germ-line sex determination. Predicted to be located in plasma membrane. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | F54F7.4 | ||||
Corresponding_CDS_history | F54F7.4:wp252 | |||||
Corresponding_transcript | F54F7.4.1 | |||||
Other_sequence | CRC10370_1 | |||||
CR05644 | ||||||
Experimental_info | RNAi_result | WBRNAi00048381 | Inferred_automatically | RNAi_primary | ||
WBRNAi00015661 | Inferred_automatically | RNAi_primary | ||||
Expr_pattern | Expr1028828 | |||||
Expr1152171 | ||||||
Expr2018112 | ||||||
Expr2036250 | ||||||
Drives_construct | WBCnstr00034065 | |||||
Construct_product | WBCnstr00034065 | |||||
Microarray_results (16) | ||||||
Expression_cluster (145) | ||||||
Map_info | Map | X | Position | 6.73782 | ||
Positive | Positive_clone | F54F7 | Author_evidence | Kuwabara PE | ||
Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | ||||||
Reference | WBPaper00003323 | |||||
Remark | Following advice from [Hodgkin J], the trx gene class was renamed to xtr. Hence this gene used to be called trx-1. [krb 020614] | |||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |