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WormBase Tree Display for Gene: WBGene00006964

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Name Class

WBGene00006964SMapS_parentSequenceY48B6A
IdentityVersion3
NameCGC_namexrn-2Paper_evidenceWBPaper00026763
Sequence_nameY48B6A.3
Molecular_nameY48B6A.3
Y48B6A.3.1
CE42702
Other_nameCELE_Y48B6A.3Accession_evidenceNDBBX284602
Public_namexrn-2
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:44WBPerson1971EventImportedInitial conversion from geneace
217 Sep 2004 10:19:03WBPerson1971Name_changeCGC_namexrn-1 name removed
314 Sep 2006 10:20:52WBPerson2970Name_changeCGC_namexrn-2
StatusLive
Gene_info (11)
Disease_infoPotential_modelDOID:1967Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:12836)
DOID:1324Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:12836)
DOID:0080202Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:12836)
Molecular_infoCorresponding_CDSY48B6A.3
Corresponding_CDS_historyY48B6A.3:wp191
Corresponding_transcriptY48B6A.3.1
Other_sequence (36)
Associated_featureWBsf658391
WBsf658392
WBsf658393
WBsf990645
WBsf222428
Experimental_infoRNAi_result (36)
Expr_patternChronogram1895
Expr3697
Expr11496
Expr1018600
Expr1032975
Expr1160333
Expr2018111
Expr2036249
Drives_constructWBCnstr00003136
WBCnstr00006894
WBCnstr00011608
WBCnstr00018878
WBCnstr00018879
WBCnstr00018880
WBCnstr00018881
WBCnstr00018882
WBCnstr00019051
WBCnstr00020324
Construct_productWBCnstr00018878
WBCnstr00018879
WBCnstr00018880
WBCnstr00018881
WBCnstr00018882
AntibodyWBAntibody00002503
Microarray_resultsSMD_Y48B6A.3
181191_at
181545_s_at
A_12_P112429
Aff_Y48B6A.C
Aff_Y48B6A.D
GPL13394_WBGene00006964
GPL13914_Y48B6A.3
GPL14144_Y48B6A.3_1090-1149_0.814_43_A
GPL14144_Y48B6A.3_330-389_0.797_50_B
GPL14144_Y48B6A.3_927-986_0.778_69_C
GPL19516_CGZ0047130
GPL21109_Y48B6A.25
GPL21109_Y48B6A.3
GPL3518_CE22118
GPL8304_CE_WBGene00006964_A
GPL8304_CE_WBGene00006964_B
GPL8673_Y48B6A_3P01434
GPL8673_Y48B6A_3P01995
GPL8673_Y48B6A_3P02251
GPL9450_Y48B6A.3
cea2.3.28703
cea2.p.50352
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00035269:cde-1_regulated
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
WBPaper00044426:rotenone_24h_downregulated
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045571:germline-ablation_downregulated
WBPaper00045774:clk-1_downregulated
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00046509:htz-1(ok3099)_downregulated
WBPaper00048579:aging_downregulated
WBPaper00048910:mRNA-interacting_protein
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049290:rsks-1(sv31)_downregulated
WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
WBPaper00049954:BPS_downregulated
WBPaper00050053:muscle_enriched_Day4
WBPaper00050182:lmn-1(L535P)_downregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050990:body-muscle_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00051039:germline_enriched
WBPaper00051245:body-wall-muscle_nucleus_expressed
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:epidermis_nucleus_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051245:intestine_nucleus_expressed
WBPaper00051245:nucleus_specific
WBPaper00051555:atm-1(gk186)_regulated_protein
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00053810:nuo-6(qm200)_downregulated
WBPaper00055226:ADR-2_target_N2
WBPaper00055334:DLC-1_interacting
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055648:germline_expressed
WBPaper00055827:pfd-6(gk493446)_downregulated
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056826:SGP_biased
WBPaper00057041:unc-70(cas983)_upregulated
WBPaper00057288:Cold_downregulated_transcript
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058691:CFP-1_interacting_protein
WBPaper00058691:WDR-5.1_interacting_protein
WBPaper00058958:100mGy-irradiation-72h_upregulated
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059605:MUT-16_interacting
WBPaper00060100:SiNP_upregulated_mRNA
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00061341:28C_24h_downregulated
WBPaper00061478:SUMO-conjugated_protein
WBPaper00061479:HDA-1_interacting_protein
WBPaper00061527:Y32B12B.2-F28C1.1
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062498:PPM-1.D_interacting
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064315:mes-3(bn199)_downregulated_PGCs
WBPaper00064716:paraquat_upregulated
WBPaper00064871:hypoxia_upregulated_F1
WBPaper00065120:body-muscle-transcriptome
WBPaper00065975:P-body_vs_oocyte_depleted
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00032948:FedUp
WBPaper00034661:AgNPs_downregulated
WBPaper00035905:FBF-1_Associated
WBPaper00036286:Pattern_E
WBPaper00036286:Pattern_H
WBPaper00040210:Diazinon_24C_regulated
WBPaper00040821:Au-NP_regulated
WBPaper00040876:mir-35_downregulated
WBPaper00041002:HQ_3d_2.0mM_Down
WBPaper00041606:CE_B.thuringiensis-DB27_regulated
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00047070:N2_UV_upregulated
WBPaper00048989:N2_rapamycin_downregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
WBPaper00055435:AuNPs_downregulated
WBPaper00057098:SiO2-nanoparticles_downregulated
Interaction (56)
Map_infoMapIIPosition22.4642Error0.003721
PositivePositive_cloneY48B6AInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (26)
RemarkThis gene was incorrectly identified as xrn-1 (which is Y39G8C.1 / WBGene00012730)Curator_confirmedWBPerson1971
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene