WormBase Tree Display for Gene: WBGene00006960
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| WBGene00006960 | SMap | S_parent | Sequence | F02D8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | xbx-1 | Person_evidence | WBPerson641 | |||||
| Sequence_name | F02D8.3 | ||||||||
| Molecular_name | F02D8.3 | ||||||||
| F02D8.3.1 | |||||||||
| CE39142 | |||||||||
| Other_name | CELE_F02D8.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | xbx-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:44 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | xbx | ||||||||
| Allele (42) | |||||||||
| Strain | WBStrain00035263 | ||||||||
| WBStrain00022845 | |||||||||
| WBStrain00029248 | |||||||||
| WBStrain00007884 | |||||||||
| WBStrain00051699 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (28) | |||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00001007 | ||||||||
| Structured_description | Concise_description | xbx-1 encodes a dynein light intermediate chain; XBX-1 activity is required for retrograde intraflagellar transport and thus, for proper formation of sensory neuron cilia; an XBX-1::YFP reporter fusion protein is found at the ciliary base and migrating along the ciliary axoneme in both anterograde and retrograde directions. | Paper_evidence | WBPaper00005876 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 13 Oct 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable dynein heavy chain binding activity. Involved in intraciliary retrograde transport and non-motile cilium assembly. Located in cilium. Expressed in neurons. Human ortholog(s) of this gene implicated in asphyxiating thoracic dystrophy. Is an ortholog of human DYNC2LI1 (dynein cytoplasmic 2 light intermediate chain 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0050592 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:24595) | ||||
| Molecular_info | Corresponding_CDS | F02D8.3 | |||||||
| Corresponding_CDS_history | F02D8.3:wp149 | ||||||||
| Corresponding_transcript | F02D8.3.1 | ||||||||
| Other_sequence | Dviv_isotig30908 | ||||||||
| JI211951.1 | |||||||||
| Oden_isotig26852 | |||||||||
| MJC01881_1 | |||||||||
| Acan_isotig12104 | |||||||||
| Oden_isotig26837 | |||||||||
| Associated_feature | WBsf042309 | ||||||||
| WBsf647560 | |||||||||
| WBsf232973 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00095208 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00043811 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030573 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram2007 | ||||||||
| Expr2565 | |||||||||
| Expr7495 | |||||||||
| Expr10110 | |||||||||
| Expr15054 | |||||||||
| Expr1021125 | |||||||||
| Expr1032971 | |||||||||
| Expr1147784 | |||||||||
| Expr2018090 | |||||||||
| Expr2036228 | |||||||||
| Drives_construct | WBCnstr00001055 | ||||||||
| WBCnstr00006703 | |||||||||
| WBCnstr00012640 | |||||||||
| WBCnstr00034069 | |||||||||
| Construct_product | WBCnstr00010855 | ||||||||
| WBCnstr00015624 | |||||||||
| WBCnstr00022309 | |||||||||
| WBCnstr00034069 | |||||||||
| WBCnstr00041890 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (118) | |||||||||
| Interaction (23) | |||||||||
| Map_info | Map | V | Position | 7.10548 | Error | 0.010124 | |||
| Positive | Positive_clone | F02D8 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4402 | |||||||
| 4759 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (47) | |||||||||
| Remark | Sequence connection from [Swoboda P, Adler HT, Thomas JH], 02/06/12 krb. | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
