WormBase Tree Display for Gene: WBGene00006954
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| WBGene00006954 | SMap | S_parent | Sequence | CHROMOSOME_V | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | wrt-8 | Person_evidence | WBPerson83 | |||||
| Sequence_name | C29F3.2 | ||||||||
| Molecular_name | C29F3.2 | ||||||||
| C29F3.2.1 | |||||||||
| CE29200 | |||||||||
| Other_name | cm20F10 | Paper_evidence | WBPaper00002823 | ||||||
| CELE_C29F3.2 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | wrt-8 | ||||||||
| DB_info | Database | AceView | gene | 5P822 | |||||
| WormQTL | gene | WBGene00006954 | |||||||
| WormFlux | gene | WBGene00006954 | |||||||
| NDB | locus_tag | CELE_C29F3.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006954|UniProtKB=Q94130 | |||||||
| family | PTHR46706 | ||||||||
| NCBI | gene | 180035 | |||||||
| RefSeq | protein | NM_074404.6 | |||||||
| SwissProt | UniProtAcc | Q94130 | |||||||
| TREEFAM | TREEFAM_ID | TF316084 | |||||||
| UniProt_GCRP | UniProtAcc | Q94130 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:43 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | wrt | ||||||||
| Allele (43) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (20) | |||||||||
| Ortholog (25) | |||||||||
| Paralog (24) | |||||||||
| Structured_description | Concise_description | wrt-8 encodes a hedgehog-like protein, with (from N- to C-terminus) asignal sequence, a Wart domain, an short region of low-complexitysequence, and a Hint/Hog domain; WRT-8 is strongly expressed inhypodermal syncytia hyp6-hyp10 throughout life, and in in 12 subventralP cells and their descendants from 3-fold embryo to L2 larva stages; theHint/Hog domain is predicted to cut WRT-8 into two halves and thencovalently link cholesterol to the C-terminus of the Wart domain; theWart domain is predicted to form a cysteine-crosslinked protein involvedin intercellular signalling, and it has subtle similarity to theN-terminal Hedge domain of HEDGEHOG proteins; WRT-8 has no obviousfunction in RNAi assays. | Paper_evidence | WBPaper00003717 | |||||
| WBPaper00026841 | |||||||||
| WBPaper00027263 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 05 Nov 2006 00:00:00 | ||||||||
| Automated_description | Predicted to enable peptidase activity. Predicted to be involved in cell-cell signaling; protein autoprocessing; and system development. Predicted to be located in cell surface; extracellular region; and plasma membrane. Expressed in hyp10; hyp6; hyp7 syncytium; hyp8; and hyp9. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C29F3.2 | |||||||
| Corresponding_CDS_history | C29F3.2:wp12 | ||||||||
| C29F3.2:wp63 | |||||||||
| Corresponding_transcript | C29F3.2.1 | ||||||||
| Other_sequence | Dviv_isotig16933 | ||||||||
| SS01151 | |||||||||
| SSC04002_1 | |||||||||
| Dviv_isotig16932 | |||||||||
| Associated_feature | WBsf653445 | ||||||||
| WBsf669773 | |||||||||
| WBsf1002264 | |||||||||
| WBsf1020997 | |||||||||
| WBsf235051 | |||||||||
| WBsf235052 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00011331 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00076987 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041461 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027687 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr648 | ||||||||
| Expr1012897 | |||||||||
| Expr1032965 | |||||||||
| Expr1145490 | |||||||||
| Expr2018083 | |||||||||
| Expr2036221 | |||||||||
| Drives_construct | WBCnstr00012473 | ||||||||
| WBCnstr00034074 | |||||||||
| Construct_product | WBCnstr00034074 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (186) | |||||||||
| Interaction (73) | |||||||||
| WBProcess | WBbiopr:00000123 | ||||||||
| Map_info | Map | V | Position | 7.86062 | Error | 0.005823 | |||
| Positive | Positive_clone | C29F3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4966 | |||||||
| 5380 | |||||||||
| 5413 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (11) | |||||||||
| Remark | C09F3.d is wrong (typo?) and .d gene has been superceded. being changed to C29F3.2 a hedghog gene.[sdm 000904] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
